Experiment: R2A with 6-Pentyl-2H-pyran-2-one 0.2865 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS09770 and ABIE41_RS09775 overlap by 4 nucleotides ABIE41_RS09775 and ABIE41_RS09780 overlap by 23 nucleotides
ABIE41_RS09770: ABIE41_RS09770 - NAD(P)/FAD-dependent oxidoreductase, at 2,019,165 to 2,020,592
_RS09770
ABIE41_RS09775: ABIE41_RS09775 - FAD-binding oxidoreductase, at 2,020,589 to 2,021,758
_RS09775
ABIE41_RS09780: ABIE41_RS09780 - dihydrodipicolinate synthase family protein, at 2,021,736 to 2,022,725
_RS09780
Position (kb)
2020
2021
2022 Strain fitness (log2 ratio)
-1
0
1
2 at 2019.827 kb on + strand, within ABIE41_RS09770 at 2020.074 kb on + strand, within ABIE41_RS09770 at 2020.075 kb on - strand, within ABIE41_RS09770 at 2020.301 kb on + strand, within ABIE41_RS09770 at 2020.302 kb on - strand, within ABIE41_RS09770 at 2020.302 kb on - strand, within ABIE41_RS09770 at 2020.492 kb on - strand at 2020.601 kb on + strand at 2020.601 kb on + strand at 2020.602 kb on - strand at 2020.773 kb on - strand, within ABIE41_RS09775 at 2021.033 kb on + strand, within ABIE41_RS09775 at 2021.033 kb on + strand, within ABIE41_RS09775 at 2021.034 kb on - strand, within ABIE41_RS09775 at 2021.337 kb on - strand, within ABIE41_RS09775 at 2021.434 kb on + strand, within ABIE41_RS09775 at 2021.435 kb on - strand, within ABIE41_RS09775 at 2021.564 kb on + strand, within ABIE41_RS09775 at 2021.564 kb on + strand, within ABIE41_RS09775 at 2021.564 kb on + strand, within ABIE41_RS09775 at 2021.565 kb on - strand, within ABIE41_RS09775 at 2021.565 kb on - strand, within ABIE41_RS09775 at 2021.565 kb on - strand, within ABIE41_RS09775 at 2021.565 kb on - strand, within ABIE41_RS09775 at 2021.565 kb on - strand, within ABIE41_RS09775 at 2021.565 kb on - strand, within ABIE41_RS09775 at 2021.567 kb on - strand, within ABIE41_RS09775 at 2021.567 kb on - strand, within ABIE41_RS09775 at 2021.567 kb on - strand, within ABIE41_RS09775 at 2021.567 kb on - strand, within ABIE41_RS09775 at 2021.567 kb on - strand, within ABIE41_RS09775 at 2021.567 kb on - strand, within ABIE41_RS09775 at 2021.567 kb on - strand, within ABIE41_RS09775 at 2021.567 kb on - strand, within ABIE41_RS09775 at 2021.591 kb on + strand, within ABIE41_RS09775 at 2021.606 kb on + strand, within ABIE41_RS09775 at 2021.606 kb on + strand, within ABIE41_RS09775 at 2021.606 kb on + strand, within ABIE41_RS09775 at 2021.606 kb on + strand, within ABIE41_RS09775 at 2021.606 kb on + strand, within ABIE41_RS09775 at 2021.607 kb on - strand, within ABIE41_RS09775 at 2022.240 kb on + strand, within ABIE41_RS09780 at 2022.240 kb on + strand, within ABIE41_RS09780 at 2022.241 kb on - strand, within ABIE41_RS09780 at 2022.241 kb on - strand, within ABIE41_RS09780 at 2022.241 kb on - strand, within ABIE41_RS09780 at 2022.321 kb on + strand, within ABIE41_RS09780 at 2022.321 kb on + strand, within ABIE41_RS09780 at 2022.322 kb on - strand, within ABIE41_RS09780 at 2022.322 kb on - strand, within ABIE41_RS09780 at 2022.405 kb on + strand, within ABIE41_RS09780 at 2022.405 kb on + strand, within ABIE41_RS09780 at 2022.406 kb on - strand, within ABIE41_RS09780 at 2022.531 kb on + strand, within ABIE41_RS09780 at 2022.531 kb on + strand, within ABIE41_RS09780 at 2022.532 kb on - strand, within ABIE41_RS09780 at 2022.669 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 6-Pentyl-2H-pyran-2-one 0.2865 mM remove 2,019,827 + ABIE41_RS09770 0.46 -0.0 2,020,074 + ABIE41_RS09770 0.64 +0.3 2,020,075 - ABIE41_RS09770 0.64 +0.1 2,020,301 + ABIE41_RS09770 0.80 +0.2 2,020,302 - ABIE41_RS09770 0.80 +2.5 2,020,302 - ABIE41_RS09770 0.80 -0.3 2,020,492 - -0.6 2,020,601 + -0.1 2,020,601 + -0.3 2,020,602 - +0.5 2,020,773 - ABIE41_RS09775 0.16 +0.8 2,021,033 + ABIE41_RS09775 0.38 -0.0 2,021,033 + ABIE41_RS09775 0.38 -0.9 2,021,034 - ABIE41_RS09775 0.38 -0.4 2,021,337 - ABIE41_RS09775 0.64 -1.0 2,021,434 + ABIE41_RS09775 0.72 -0.6 2,021,435 - ABIE41_RS09775 0.72 -0.3 2,021,564 + ABIE41_RS09775 0.83 -0.4 2,021,564 + ABIE41_RS09775 0.83 -0.3 2,021,564 + ABIE41_RS09775 0.83 -0.2 2,021,565 - ABIE41_RS09775 0.83 -0.2 2,021,565 - ABIE41_RS09775 0.83 -0.2 2,021,565 - ABIE41_RS09775 0.83 -1.3 2,021,565 - ABIE41_RS09775 0.83 -0.5 2,021,565 - ABIE41_RS09775 0.83 -0.1 2,021,565 - ABIE41_RS09775 0.83 +0.7 2,021,567 - ABIE41_RS09775 0.84 -0.1 2,021,567 - ABIE41_RS09775 0.84 -0.3 2,021,567 - ABIE41_RS09775 0.84 +0.2 2,021,567 - ABIE41_RS09775 0.84 +0.8 2,021,567 - ABIE41_RS09775 0.84 -0.6 2,021,567 - ABIE41_RS09775 0.84 -0.2 2,021,567 - ABIE41_RS09775 0.84 -0.0 2,021,567 - ABIE41_RS09775 0.84 -0.8 2,021,591 + ABIE41_RS09775 0.86 +1.3 2,021,606 + ABIE41_RS09775 0.87 -0.0 2,021,606 + ABIE41_RS09775 0.87 -1.1 2,021,606 + ABIE41_RS09775 0.87 +0.8 2,021,606 + ABIE41_RS09775 0.87 -0.4 2,021,606 + ABIE41_RS09775 0.87 +0.2 2,021,607 - ABIE41_RS09775 0.87 +0.1 2,022,240 + ABIE41_RS09780 0.51 +0.1 2,022,240 + ABIE41_RS09780 0.51 +1.2 2,022,241 - ABIE41_RS09780 0.51 +1.5 2,022,241 - ABIE41_RS09780 0.51 +1.2 2,022,241 - ABIE41_RS09780 0.51 +0.4 2,022,321 + ABIE41_RS09780 0.59 -0.0 2,022,321 + ABIE41_RS09780 0.59 -0.0 2,022,322 - ABIE41_RS09780 0.59 +0.4 2,022,322 - ABIE41_RS09780 0.59 +0.6 2,022,405 + ABIE41_RS09780 0.68 -1.4 2,022,405 + ABIE41_RS09780 0.68 +0.9 2,022,406 - ABIE41_RS09780 0.68 -0.2 2,022,531 + ABIE41_RS09780 0.80 -0.8 2,022,531 + ABIE41_RS09780 0.80 +2.1 2,022,532 - ABIE41_RS09780 0.80 +0.1 2,022,669 + -0.2
Or see this region's nucleotide sequence