Experiment: Laval1374
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_04128 and ECD_04129 are separated by 160 nucleotides ECD_04129 and ECD_04130 are separated by 77 nucleotides
ECD_04128: ECD_04128 - lipopolysaccharide export ABC permease, at 4,398,910 to 4,399,992
_04128
ECD_04129: ECD_04129 - DUF853 family protein with NTPase fold, at 4,400,153 to 4,401,655
_04129
ECD_04130: ECD_04130 - transcriptional repressor, 5-gluconate-binding, at 4,401,733 to 4,402,731
_04130
Position (kb)
4400
4401
4402 Strain fitness (log2 ratio)
-1
0
1
2 at 4399.958 kb on + strand at 4400.154 kb on + strand at 4400.154 kb on + strand at 4400.155 kb on - strand at 4400.155 kb on - strand at 4400.155 kb on - strand at 4400.155 kb on - strand at 4400.195 kb on + strand at 4400.294 kb on - strand at 4400.403 kb on + strand, within ECD_04129 at 4400.433 kb on + strand, within ECD_04129 at 4400.433 kb on + strand, within ECD_04129 at 4400.434 kb on - strand, within ECD_04129 at 4400.434 kb on - strand, within ECD_04129 at 4400.471 kb on - strand, within ECD_04129 at 4400.789 kb on - strand, within ECD_04129 at 4400.822 kb on + strand, within ECD_04129 at 4400.916 kb on + strand, within ECD_04129 at 4400.917 kb on - strand, within ECD_04129 at 4401.134 kb on - strand, within ECD_04129 at 4401.136 kb on + strand, within ECD_04129 at 4401.142 kb on - strand, within ECD_04129 at 4401.250 kb on + strand, within ECD_04129 at 4401.638 kb on + strand at 4401.639 kb on - strand at 4401.685 kb on - strand at 4401.686 kb on + strand at 4401.715 kb on + strand at 4401.716 kb on - strand at 4401.716 kb on - strand at 4401.734 kb on + strand at 4402.000 kb on + strand, within ECD_04130 at 4402.010 kb on - strand, within ECD_04130 at 4402.042 kb on + strand, within ECD_04130 at 4402.090 kb on + strand, within ECD_04130 at 4402.212 kb on + strand, within ECD_04130 at 4402.213 kb on - strand, within ECD_04130 at 4402.213 kb on - strand, within ECD_04130 at 4402.280 kb on - strand, within ECD_04130 at 4402.280 kb on - strand, within ECD_04130 at 4402.361 kb on - strand, within ECD_04130 at 4402.378 kb on - strand, within ECD_04130 at 4402.379 kb on + strand, within ECD_04130 at 4402.425 kb on - strand, within ECD_04130 at 4402.455 kb on + strand, within ECD_04130 at 4402.456 kb on - strand, within ECD_04130 at 4402.539 kb on + strand, within ECD_04130 at 4402.539 kb on + strand, within ECD_04130
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1374 remove 4,399,958 + +0.9 4,400,154 + -0.2 4,400,154 + -0.5 4,400,155 - +0.9 4,400,155 - +0.1 4,400,155 - +0.8 4,400,155 - -0.2 4,400,195 + -0.9 4,400,294 - -0.2 4,400,403 + ECD_04129 0.17 -1.0 4,400,433 + ECD_04129 0.19 +1.2 4,400,433 + ECD_04129 0.19 +0.0 4,400,434 - ECD_04129 0.19 +0.5 4,400,434 - ECD_04129 0.19 +0.8 4,400,471 - ECD_04129 0.21 -0.0 4,400,789 - ECD_04129 0.42 -0.1 4,400,822 + ECD_04129 0.45 +0.3 4,400,916 + ECD_04129 0.51 +0.1 4,400,917 - ECD_04129 0.51 +0.1 4,401,134 - ECD_04129 0.65 +0.7 4,401,136 + ECD_04129 0.65 +0.5 4,401,142 - ECD_04129 0.66 +0.5 4,401,250 + ECD_04129 0.73 +0.4 4,401,638 + +2.4 4,401,639 - +0.1 4,401,685 - -0.2 4,401,686 + +0.6 4,401,715 + -0.2 4,401,716 - +0.1 4,401,716 - +0.4 4,401,734 + +0.4 4,402,000 + ECD_04130 0.27 +0.5 4,402,010 - ECD_04130 0.28 +0.0 4,402,042 + ECD_04130 0.31 -1.3 4,402,090 + ECD_04130 0.36 +0.8 4,402,212 + ECD_04130 0.48 -1.1 4,402,213 - ECD_04130 0.48 -0.2 4,402,213 - ECD_04130 0.48 -0.9 4,402,280 - ECD_04130 0.55 +0.6 4,402,280 - ECD_04130 0.55 -0.2 4,402,361 - ECD_04130 0.63 -1.0 4,402,378 - ECD_04130 0.65 +0.2 4,402,379 + ECD_04130 0.65 -0.4 4,402,425 - ECD_04130 0.69 -0.4 4,402,455 + ECD_04130 0.72 -0.4 4,402,456 - ECD_04130 0.72 +0.3 4,402,539 + ECD_04130 0.81 +0.1 4,402,539 + ECD_04130 0.81 -0.3
Or see this region's nucleotide sequence