Experiment: Laval1374
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03866 and ECD_03867 overlap by 4 nucleotides ECD_03867 and ECD_03868 are separated by 1 nucleotides ECD_03868 and ECD_03869 overlap by 17 nucleotides ECD_03869 and ECD_03870 overlap by 8 nucleotides
ECD_03866: ECD_03866 - tyrosine lyase, involved in thiamine-thiazole moiety synthesis, at 4,098,786 to 4,099,919
_03866
ECD_03867: ECD_03867 - thiamine biosynthesis ThiGH complex subunit, at 4,099,916 to 4,100,686
_03867
ECD_03868: ECD_03868 - immediate sulfur donor in thiazole formation, at 4,100,688 to 4,100,888
_03868
ECD_03869: ECD_03869 - adenylyltransferase, modifies ThiS C-terminus, at 4,100,872 to 4,101,627
_03869
ECD_03870: ECD_03870 - thiamine phosphate synthase (thiamine phosphate pyrophosphorylase), at 4,101,620 to 4,102,255
_03870
Position (kb)
4099
4100
4101 Strain fitness (log2 ratio)
-2
-1
0
1 at 4099.080 kb on + strand, within ECD_03866 at 4099.124 kb on + strand, within ECD_03866 at 4099.125 kb on - strand, within ECD_03866 at 4099.189 kb on - strand, within ECD_03866 at 4099.208 kb on + strand, within ECD_03866 at 4099.208 kb on + strand, within ECD_03866 at 4099.208 kb on + strand, within ECD_03866 at 4099.209 kb on - strand, within ECD_03866 at 4099.210 kb on + strand, within ECD_03866 at 4099.210 kb on + strand, within ECD_03866 at 4099.210 kb on + strand, within ECD_03866 at 4099.210 kb on + strand, within ECD_03866 at 4099.210 kb on + strand, within ECD_03866 at 4099.210 kb on + strand, within ECD_03866 at 4099.210 kb on + strand, within ECD_03866 at 4099.211 kb on - strand, within ECD_03866 at 4099.211 kb on - strand, within ECD_03866 at 4099.211 kb on - strand, within ECD_03866 at 4099.211 kb on - strand, within ECD_03866 at 4099.260 kb on + strand, within ECD_03866 at 4099.265 kb on + strand, within ECD_03866 at 4099.266 kb on - strand, within ECD_03866 at 4099.351 kb on + strand, within ECD_03866 at 4099.352 kb on - strand, within ECD_03866 at 4099.366 kb on + strand, within ECD_03866 at 4099.366 kb on + strand, within ECD_03866 at 4099.367 kb on - strand, within ECD_03866 at 4099.367 kb on - strand, within ECD_03866 at 4099.367 kb on - strand, within ECD_03866 at 4099.367 kb on - strand, within ECD_03866 at 4099.367 kb on - strand, within ECD_03866 at 4099.367 kb on - strand, within ECD_03866 at 4099.367 kb on - strand, within ECD_03866 at 4099.367 kb on - strand, within ECD_03866 at 4099.379 kb on - strand, within ECD_03866 at 4099.410 kb on + strand, within ECD_03866 at 4099.501 kb on + strand, within ECD_03866 at 4099.539 kb on + strand, within ECD_03866 at 4099.542 kb on + strand, within ECD_03866 at 4099.543 kb on - strand, within ECD_03866 at 4099.543 kb on - strand, within ECD_03866 at 4099.543 kb on - strand, within ECD_03866 at 4099.571 kb on + strand, within ECD_03866 at 4099.572 kb on - strand, within ECD_03866 at 4099.628 kb on + strand, within ECD_03866 at 4099.648 kb on + strand, within ECD_03866 at 4099.648 kb on + strand, within ECD_03866 at 4099.681 kb on + strand, within ECD_03866 at 4099.681 kb on + strand, within ECD_03866 at 4099.693 kb on + strand, within ECD_03866 at 4099.700 kb on + strand, within ECD_03866 at 4099.701 kb on - strand, within ECD_03866 at 4099.837 kb on - strand at 4099.837 kb on - strand at 4100.302 kb on - strand, within ECD_03867 at 4100.327 kb on + strand, within ECD_03867 at 4100.328 kb on - strand, within ECD_03867 at 4100.678 kb on - strand at 4100.678 kb on - strand at 4100.682 kb on - strand at 4100.741 kb on + strand, within ECD_03868 at 4100.741 kb on + strand, within ECD_03868 at 4100.742 kb on - strand, within ECD_03868 at 4100.826 kb on + strand, within ECD_03868 at 4100.992 kb on + strand, within ECD_03869 at 4100.993 kb on - strand, within ECD_03869 at 4100.993 kb on - strand, within ECD_03869 at 4101.001 kb on + strand, within ECD_03869 at 4101.005 kb on - strand, within ECD_03869 at 4101.005 kb on - strand, within ECD_03869 at 4101.005 kb on - strand, within ECD_03869 at 4101.009 kb on + strand, within ECD_03869 at 4101.010 kb on - strand, within ECD_03869 at 4101.099 kb on + strand, within ECD_03869 at 4101.189 kb on + strand, within ECD_03869 at 4101.223 kb on - strand, within ECD_03869 at 4101.319 kb on + strand, within ECD_03869 at 4101.319 kb on + strand, within ECD_03869 at 4101.319 kb on + strand, within ECD_03869 at 4101.319 kb on + strand, within ECD_03869 at 4101.319 kb on + strand, within ECD_03869 at 4101.319 kb on + strand, within ECD_03869 at 4101.320 kb on - strand, within ECD_03869 at 4101.320 kb on - strand, within ECD_03869 at 4101.320 kb on - strand, within ECD_03869 at 4101.320 kb on - strand, within ECD_03869 at 4101.320 kb on - strand, within ECD_03869 at 4101.491 kb on + strand, within ECD_03869 at 4101.507 kb on + strand, within ECD_03869 at 4101.600 kb on + strand at 4101.600 kb on + strand at 4101.610 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1374 remove 4,099,080 + ECD_03866 0.26 +0.2 4,099,124 + ECD_03866 0.30 +0.1 4,099,125 - ECD_03866 0.30 +1.5 4,099,189 - ECD_03866 0.36 -0.2 4,099,208 + ECD_03866 0.37 +0.6 4,099,208 + ECD_03866 0.37 +0.1 4,099,208 + ECD_03866 0.37 -0.3 4,099,209 - ECD_03866 0.37 +0.2 4,099,210 + ECD_03866 0.37 +0.8 4,099,210 + ECD_03866 0.37 +1.0 4,099,210 + ECD_03866 0.37 +0.1 4,099,210 + ECD_03866 0.37 -0.1 4,099,210 + ECD_03866 0.37 -0.1 4,099,210 + ECD_03866 0.37 -1.1 4,099,210 + ECD_03866 0.37 -0.1 4,099,211 - ECD_03866 0.37 -0.1 4,099,211 - ECD_03866 0.37 +0.3 4,099,211 - ECD_03866 0.37 +0.6 4,099,211 - ECD_03866 0.37 -0.1 4,099,260 + ECD_03866 0.42 +0.4 4,099,265 + ECD_03866 0.42 -0.3 4,099,266 - ECD_03866 0.42 +0.4 4,099,351 + ECD_03866 0.50 +0.1 4,099,352 - ECD_03866 0.50 +0.2 4,099,366 + ECD_03866 0.51 -0.0 4,099,366 + ECD_03866 0.51 -0.2 4,099,367 - ECD_03866 0.51 +0.2 4,099,367 - ECD_03866 0.51 -2.1 4,099,367 - ECD_03866 0.51 +0.2 4,099,367 - ECD_03866 0.51 -0.6 4,099,367 - ECD_03866 0.51 -0.1 4,099,367 - ECD_03866 0.51 -0.2 4,099,367 - ECD_03866 0.51 +0.8 4,099,367 - ECD_03866 0.51 -0.6 4,099,379 - ECD_03866 0.52 +0.5 4,099,410 + ECD_03866 0.55 -0.1 4,099,501 + ECD_03866 0.63 -0.3 4,099,539 + ECD_03866 0.66 -0.0 4,099,542 + ECD_03866 0.67 -0.4 4,099,543 - ECD_03866 0.67 -0.2 4,099,543 - ECD_03866 0.67 -0.7 4,099,543 - ECD_03866 0.67 +0.4 4,099,571 + ECD_03866 0.69 +0.2 4,099,572 - ECD_03866 0.69 +0.2 4,099,628 + ECD_03866 0.74 +0.6 4,099,648 + ECD_03866 0.76 -0.1 4,099,648 + ECD_03866 0.76 -0.8 4,099,681 + ECD_03866 0.79 -0.2 4,099,681 + ECD_03866 0.79 +0.4 4,099,693 + ECD_03866 0.80 +0.1 4,099,700 + ECD_03866 0.81 +0.2 4,099,701 - ECD_03866 0.81 +0.2 4,099,837 - +0.4 4,099,837 - +1.0 4,100,302 - ECD_03867 0.50 +0.2 4,100,327 + ECD_03867 0.53 +0.6 4,100,328 - ECD_03867 0.53 +0.8 4,100,678 - -0.1 4,100,678 - -0.3 4,100,682 - -0.3 4,100,741 + ECD_03868 0.26 -1.9 4,100,741 + ECD_03868 0.26 +1.0 4,100,742 - ECD_03868 0.27 -0.9 4,100,826 + ECD_03868 0.69 +0.4 4,100,992 + ECD_03869 0.16 -0.5 4,100,993 - ECD_03869 0.16 -0.3 4,100,993 - ECD_03869 0.16 +0.4 4,101,001 + ECD_03869 0.17 +0.1 4,101,005 - ECD_03869 0.18 +0.2 4,101,005 - ECD_03869 0.18 +0.2 4,101,005 - ECD_03869 0.18 -0.9 4,101,009 + ECD_03869 0.18 +0.5 4,101,010 - ECD_03869 0.18 -0.3 4,101,099 + ECD_03869 0.30 +0.9 4,101,189 + ECD_03869 0.42 +0.8 4,101,223 - ECD_03869 0.46 -0.0 4,101,319 + ECD_03869 0.59 -0.9 4,101,319 + ECD_03869 0.59 +0.7 4,101,319 + ECD_03869 0.59 +0.6 4,101,319 + ECD_03869 0.59 +0.3 4,101,319 + ECD_03869 0.59 -0.8 4,101,319 + ECD_03869 0.59 +0.3 4,101,320 - ECD_03869 0.59 -1.6 4,101,320 - ECD_03869 0.59 -0.4 4,101,320 - ECD_03869 0.59 -0.4 4,101,320 - ECD_03869 0.59 -2.0 4,101,320 - ECD_03869 0.59 +0.1 4,101,491 + ECD_03869 0.82 +0.1 4,101,507 + ECD_03869 0.84 -0.7 4,101,600 + -0.0 4,101,600 + +0.6 4,101,610 - -0.8
Or see this region's nucleotide sequence