Strain Fitness in Escherichia coli BL21 around ECD_03867

Experiment: Laval1374

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03866 and ECD_03867 overlap by 4 nucleotidesECD_03867 and ECD_03868 are separated by 1 nucleotidesECD_03868 and ECD_03869 overlap by 17 nucleotidesECD_03869 and ECD_03870 overlap by 8 nucleotides ECD_03866: ECD_03866 - tyrosine lyase, involved in thiamine-thiazole moiety synthesis, at 4,098,786 to 4,099,919 _03866 ECD_03867: ECD_03867 - thiamine biosynthesis ThiGH complex subunit, at 4,099,916 to 4,100,686 _03867 ECD_03868: ECD_03868 - immediate sulfur donor in thiazole formation, at 4,100,688 to 4,100,888 _03868 ECD_03869: ECD_03869 - adenylyltransferase, modifies ThiS C-terminus, at 4,100,872 to 4,101,627 _03869 ECD_03870: ECD_03870 - thiamine phosphate synthase (thiamine phosphate pyrophosphorylase), at 4,101,620 to 4,102,255 _03870 Position (kb) 4099 4100 4101Strain fitness (log2 ratio) -2 -1 0 1at 4099.080 kb on + strand, within ECD_03866at 4099.124 kb on + strand, within ECD_03866at 4099.125 kb on - strand, within ECD_03866at 4099.189 kb on - strand, within ECD_03866at 4099.208 kb on + strand, within ECD_03866at 4099.208 kb on + strand, within ECD_03866at 4099.208 kb on + strand, within ECD_03866at 4099.209 kb on - strand, within ECD_03866at 4099.210 kb on + strand, within ECD_03866at 4099.210 kb on + strand, within ECD_03866at 4099.210 kb on + strand, within ECD_03866at 4099.210 kb on + strand, within ECD_03866at 4099.210 kb on + strand, within ECD_03866at 4099.210 kb on + strand, within ECD_03866at 4099.210 kb on + strand, within ECD_03866at 4099.211 kb on - strand, within ECD_03866at 4099.211 kb on - strand, within ECD_03866at 4099.211 kb on - strand, within ECD_03866at 4099.211 kb on - strand, within ECD_03866at 4099.260 kb on + strand, within ECD_03866at 4099.265 kb on + strand, within ECD_03866at 4099.266 kb on - strand, within ECD_03866at 4099.351 kb on + strand, within ECD_03866at 4099.352 kb on - strand, within ECD_03866at 4099.366 kb on + strand, within ECD_03866at 4099.366 kb on + strand, within ECD_03866at 4099.367 kb on - strand, within ECD_03866at 4099.367 kb on - strand, within ECD_03866at 4099.367 kb on - strand, within ECD_03866at 4099.367 kb on - strand, within ECD_03866at 4099.367 kb on - strand, within ECD_03866at 4099.367 kb on - strand, within ECD_03866at 4099.367 kb on - strand, within ECD_03866at 4099.367 kb on - strand, within ECD_03866at 4099.379 kb on - strand, within ECD_03866at 4099.410 kb on + strand, within ECD_03866at 4099.501 kb on + strand, within ECD_03866at 4099.539 kb on + strand, within ECD_03866at 4099.542 kb on + strand, within ECD_03866at 4099.543 kb on - strand, within ECD_03866at 4099.543 kb on - strand, within ECD_03866at 4099.543 kb on - strand, within ECD_03866at 4099.571 kb on + strand, within ECD_03866at 4099.572 kb on - strand, within ECD_03866at 4099.628 kb on + strand, within ECD_03866at 4099.648 kb on + strand, within ECD_03866at 4099.648 kb on + strand, within ECD_03866at 4099.681 kb on + strand, within ECD_03866at 4099.681 kb on + strand, within ECD_03866at 4099.693 kb on + strand, within ECD_03866at 4099.700 kb on + strand, within ECD_03866at 4099.701 kb on - strand, within ECD_03866at 4099.837 kb on - strandat 4099.837 kb on - strandat 4100.302 kb on - strand, within ECD_03867at 4100.327 kb on + strand, within ECD_03867at 4100.328 kb on - strand, within ECD_03867at 4100.678 kb on - strandat 4100.678 kb on - strandat 4100.682 kb on - strandat 4100.741 kb on + strand, within ECD_03868at 4100.741 kb on + strand, within ECD_03868at 4100.742 kb on - strand, within ECD_03868at 4100.826 kb on + strand, within ECD_03868at 4100.992 kb on + strand, within ECD_03869at 4100.993 kb on - strand, within ECD_03869at 4100.993 kb on - strand, within ECD_03869at 4101.001 kb on + strand, within ECD_03869at 4101.005 kb on - strand, within ECD_03869at 4101.005 kb on - strand, within ECD_03869at 4101.005 kb on - strand, within ECD_03869at 4101.009 kb on + strand, within ECD_03869at 4101.010 kb on - strand, within ECD_03869at 4101.099 kb on + strand, within ECD_03869at 4101.189 kb on + strand, within ECD_03869at 4101.223 kb on - strand, within ECD_03869at 4101.319 kb on + strand, within ECD_03869at 4101.319 kb on + strand, within ECD_03869at 4101.319 kb on + strand, within ECD_03869at 4101.319 kb on + strand, within ECD_03869at 4101.319 kb on + strand, within ECD_03869at 4101.319 kb on + strand, within ECD_03869at 4101.320 kb on - strand, within ECD_03869at 4101.320 kb on - strand, within ECD_03869at 4101.320 kb on - strand, within ECD_03869at 4101.320 kb on - strand, within ECD_03869at 4101.320 kb on - strand, within ECD_03869at 4101.491 kb on + strand, within ECD_03869at 4101.507 kb on + strand, within ECD_03869at 4101.600 kb on + strandat 4101.600 kb on + strandat 4101.610 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Laval1374
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4,099,080 + ECD_03866 0.26 +0.2
4,099,124 + ECD_03866 0.30 +0.1
4,099,125 - ECD_03866 0.30 +1.5
4,099,189 - ECD_03866 0.36 -0.2
4,099,208 + ECD_03866 0.37 +0.6
4,099,208 + ECD_03866 0.37 +0.1
4,099,208 + ECD_03866 0.37 -0.3
4,099,209 - ECD_03866 0.37 +0.2
4,099,210 + ECD_03866 0.37 +0.8
4,099,210 + ECD_03866 0.37 +1.0
4,099,210 + ECD_03866 0.37 +0.1
4,099,210 + ECD_03866 0.37 -0.1
4,099,210 + ECD_03866 0.37 -0.1
4,099,210 + ECD_03866 0.37 -1.1
4,099,210 + ECD_03866 0.37 -0.1
4,099,211 - ECD_03866 0.37 -0.1
4,099,211 - ECD_03866 0.37 +0.3
4,099,211 - ECD_03866 0.37 +0.6
4,099,211 - ECD_03866 0.37 -0.1
4,099,260 + ECD_03866 0.42 +0.4
4,099,265 + ECD_03866 0.42 -0.3
4,099,266 - ECD_03866 0.42 +0.4
4,099,351 + ECD_03866 0.50 +0.1
4,099,352 - ECD_03866 0.50 +0.2
4,099,366 + ECD_03866 0.51 -0.0
4,099,366 + ECD_03866 0.51 -0.2
4,099,367 - ECD_03866 0.51 +0.2
4,099,367 - ECD_03866 0.51 -2.1
4,099,367 - ECD_03866 0.51 +0.2
4,099,367 - ECD_03866 0.51 -0.6
4,099,367 - ECD_03866 0.51 -0.1
4,099,367 - ECD_03866 0.51 -0.2
4,099,367 - ECD_03866 0.51 +0.8
4,099,367 - ECD_03866 0.51 -0.6
4,099,379 - ECD_03866 0.52 +0.5
4,099,410 + ECD_03866 0.55 -0.1
4,099,501 + ECD_03866 0.63 -0.3
4,099,539 + ECD_03866 0.66 -0.0
4,099,542 + ECD_03866 0.67 -0.4
4,099,543 - ECD_03866 0.67 -0.2
4,099,543 - ECD_03866 0.67 -0.7
4,099,543 - ECD_03866 0.67 +0.4
4,099,571 + ECD_03866 0.69 +0.2
4,099,572 - ECD_03866 0.69 +0.2
4,099,628 + ECD_03866 0.74 +0.6
4,099,648 + ECD_03866 0.76 -0.1
4,099,648 + ECD_03866 0.76 -0.8
4,099,681 + ECD_03866 0.79 -0.2
4,099,681 + ECD_03866 0.79 +0.4
4,099,693 + ECD_03866 0.80 +0.1
4,099,700 + ECD_03866 0.81 +0.2
4,099,701 - ECD_03866 0.81 +0.2
4,099,837 - +0.4
4,099,837 - +1.0
4,100,302 - ECD_03867 0.50 +0.2
4,100,327 + ECD_03867 0.53 +0.6
4,100,328 - ECD_03867 0.53 +0.8
4,100,678 - -0.1
4,100,678 - -0.3
4,100,682 - -0.3
4,100,741 + ECD_03868 0.26 -1.9
4,100,741 + ECD_03868 0.26 +1.0
4,100,742 - ECD_03868 0.27 -0.9
4,100,826 + ECD_03868 0.69 +0.4
4,100,992 + ECD_03869 0.16 -0.5
4,100,993 - ECD_03869 0.16 -0.3
4,100,993 - ECD_03869 0.16 +0.4
4,101,001 + ECD_03869 0.17 +0.1
4,101,005 - ECD_03869 0.18 +0.2
4,101,005 - ECD_03869 0.18 +0.2
4,101,005 - ECD_03869 0.18 -0.9
4,101,009 + ECD_03869 0.18 +0.5
4,101,010 - ECD_03869 0.18 -0.3
4,101,099 + ECD_03869 0.30 +0.9
4,101,189 + ECD_03869 0.42 +0.8
4,101,223 - ECD_03869 0.46 -0.0
4,101,319 + ECD_03869 0.59 -0.9
4,101,319 + ECD_03869 0.59 +0.7
4,101,319 + ECD_03869 0.59 +0.6
4,101,319 + ECD_03869 0.59 +0.3
4,101,319 + ECD_03869 0.59 -0.8
4,101,319 + ECD_03869 0.59 +0.3
4,101,320 - ECD_03869 0.59 -1.6
4,101,320 - ECD_03869 0.59 -0.4
4,101,320 - ECD_03869 0.59 -0.4
4,101,320 - ECD_03869 0.59 -2.0
4,101,320 - ECD_03869 0.59 +0.1
4,101,491 + ECD_03869 0.82 +0.1
4,101,507 + ECD_03869 0.84 -0.7
4,101,600 + -0.0
4,101,600 + +0.6
4,101,610 - -0.8

Or see this region's nucleotide sequence