Strain Fitness in Escherichia coli BL21 around ECD_03383

Experiment: Laval1374

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03381 and ECD_03383 are separated by 760 nucleotidesECD_03383 and ECD_03384 are separated by 272 nucleotides ECD_03381: ECD_03381 - cellulose synthase, catalytic subunit, at 3,553,806 to 3,556,424 _03381 ECD_03383: ECD_03383 - DUF2629 family protein, at 3,557,185 to 3,557,373 _03383 ECD_03384: ECD_03384 - cellulose production protein, at 3,557,646 to 3,559,217 _03384 Position (kb) 3557 3558Strain fitness (log2 ratio) -1 0 1at 3556.221 kb on - strandat 3556.238 kb on + strandat 3556.238 kb on + strandat 3556.253 kb on + strandat 3556.284 kb on - strandat 3556.459 kb on - strandat 3556.491 kb on - strandat 3556.491 kb on - strandat 3556.529 kb on + strandat 3556.530 kb on - strandat 3556.530 kb on - strandat 3556.623 kb on + strandat 3556.624 kb on - strandat 3556.627 kb on + strandat 3556.628 kb on - strandat 3556.628 kb on - strandat 3556.660 kb on + strandat 3556.660 kb on + strandat 3556.661 kb on - strandat 3556.661 kb on - strandat 3556.664 kb on - strandat 3556.672 kb on + strandat 3556.778 kb on + strandat 3556.779 kb on - strandat 3556.799 kb on + strandat 3556.839 kb on - strandat 3556.847 kb on + strandat 3556.861 kb on + strandat 3556.991 kb on - strandat 3556.991 kb on - strandat 3557.029 kb on + strandat 3557.030 kb on - strandat 3557.030 kb on - strandat 3557.096 kb on + strandat 3557.097 kb on - strandat 3557.228 kb on - strand, within ECD_03383at 3557.267 kb on + strand, within ECD_03383at 3557.267 kb on + strand, within ECD_03383at 3557.267 kb on + strand, within ECD_03383at 3557.268 kb on - strand, within ECD_03383at 3557.299 kb on + strand, within ECD_03383at 3557.310 kb on + strand, within ECD_03383at 3557.311 kb on - strand, within ECD_03383at 3557.311 kb on - strand, within ECD_03383at 3557.326 kb on - strand, within ECD_03383at 3557.326 kb on - strand, within ECD_03383at 3557.327 kb on + strand, within ECD_03383at 3557.327 kb on + strand, within ECD_03383at 3557.327 kb on + strand, within ECD_03383at 3557.328 kb on - strand, within ECD_03383at 3557.328 kb on - strand, within ECD_03383at 3557.328 kb on - strand, within ECD_03383at 3557.352 kb on + strand, within ECD_03383at 3557.352 kb on + strand, within ECD_03383at 3557.374 kb on - strandat 3557.401 kb on - strandat 3557.444 kb on - strandat 3557.669 kb on - strandat 3557.711 kb on + strandat 3557.823 kb on - strand, within ECD_03384at 3557.823 kb on - strand, within ECD_03384at 3557.920 kb on + strand, within ECD_03384at 3557.975 kb on + strand, within ECD_03384at 3557.994 kb on - strand, within ECD_03384at 3558.050 kb on + strand, within ECD_03384at 3558.089 kb on + strand, within ECD_03384at 3558.246 kb on - strand, within ECD_03384at 3558.277 kb on + strand, within ECD_03384at 3558.277 kb on + strand, within ECD_03384at 3558.277 kb on + strand, within ECD_03384

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Per-strain Table

Position Strand Gene LocusTag Fraction Laval1374
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3,556,221 - +1.0
3,556,238 + -0.5
3,556,238 + +0.2
3,556,253 + +1.2
3,556,284 - -0.8
3,556,459 - -0.2
3,556,491 - +0.6
3,556,491 - +0.2
3,556,529 + +0.0
3,556,530 - +0.3
3,556,530 - +0.4
3,556,623 + +0.8
3,556,624 - -1.0
3,556,627 + -0.6
3,556,628 - +0.1
3,556,628 - -0.1
3,556,660 + +0.3
3,556,660 + -0.0
3,556,661 - -0.0
3,556,661 - -0.0
3,556,664 - -0.4
3,556,672 + +0.3
3,556,778 + +0.1
3,556,779 - +1.0
3,556,799 + +0.3
3,556,839 - +0.2
3,556,847 + +0.3
3,556,861 + -0.5
3,556,991 - -0.4
3,556,991 - +0.3
3,557,029 + -0.3
3,557,030 - -1.4
3,557,030 - -0.8
3,557,096 + -0.7
3,557,097 - +0.1
3,557,228 - ECD_03383 0.23 +0.5
3,557,267 + ECD_03383 0.43 -0.4
3,557,267 + ECD_03383 0.43 +0.7
3,557,267 + ECD_03383 0.43 +0.2
3,557,268 - ECD_03383 0.44 +0.1
3,557,299 + ECD_03383 0.60 -0.1
3,557,310 + ECD_03383 0.66 +1.2
3,557,311 - ECD_03383 0.67 +0.3
3,557,311 - ECD_03383 0.67 +1.4
3,557,326 - ECD_03383 0.75 +0.4
3,557,326 - ECD_03383 0.75 -0.2
3,557,327 + ECD_03383 0.75 +0.4
3,557,327 + ECD_03383 0.75 -0.0
3,557,327 + ECD_03383 0.75 +0.0
3,557,328 - ECD_03383 0.76 +1.3
3,557,328 - ECD_03383 0.76 +0.6
3,557,328 - ECD_03383 0.76 +0.5
3,557,352 + ECD_03383 0.88 -0.5
3,557,352 + ECD_03383 0.88 +0.8
3,557,374 - -0.2
3,557,401 - +0.6
3,557,444 - +0.7
3,557,669 - -0.0
3,557,711 + -0.3
3,557,823 - ECD_03384 0.11 -0.6
3,557,823 - ECD_03384 0.11 +0.4
3,557,920 + ECD_03384 0.17 -0.3
3,557,975 + ECD_03384 0.21 -0.4
3,557,994 - ECD_03384 0.22 +0.3
3,558,050 + ECD_03384 0.26 +1.0
3,558,089 + ECD_03384 0.28 +0.1
3,558,246 - ECD_03384 0.38 -0.8
3,558,277 + ECD_03384 0.40 -1.3
3,558,277 + ECD_03384 0.40 -1.0
3,558,277 + ECD_03384 0.40 +1.3

Or see this region's nucleotide sequence