Experiment: Laval1374
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03381 and ECD_03383 are separated by 760 nucleotides ECD_03383 and ECD_03384 are separated by 272 nucleotides
ECD_03381: ECD_03381 - cellulose synthase, catalytic subunit, at 3,553,806 to 3,556,424
_03381
ECD_03383: ECD_03383 - DUF2629 family protein, at 3,557,185 to 3,557,373
_03383
ECD_03384: ECD_03384 - cellulose production protein, at 3,557,646 to 3,559,217
_03384
Position (kb)
3557
3558 Strain fitness (log2 ratio)
-1
0
1 at 3556.221 kb on - strand at 3556.238 kb on + strand at 3556.238 kb on + strand at 3556.253 kb on + strand at 3556.284 kb on - strand at 3556.459 kb on - strand at 3556.491 kb on - strand at 3556.491 kb on - strand at 3556.529 kb on + strand at 3556.530 kb on - strand at 3556.530 kb on - strand at 3556.623 kb on + strand at 3556.624 kb on - strand at 3556.627 kb on + strand at 3556.628 kb on - strand at 3556.628 kb on - strand at 3556.660 kb on + strand at 3556.660 kb on + strand at 3556.661 kb on - strand at 3556.661 kb on - strand at 3556.664 kb on - strand at 3556.672 kb on + strand at 3556.778 kb on + strand at 3556.779 kb on - strand at 3556.799 kb on + strand at 3556.839 kb on - strand at 3556.847 kb on + strand at 3556.861 kb on + strand at 3556.991 kb on - strand at 3556.991 kb on - strand at 3557.029 kb on + strand at 3557.030 kb on - strand at 3557.030 kb on - strand at 3557.096 kb on + strand at 3557.097 kb on - strand at 3557.228 kb on - strand, within ECD_03383 at 3557.267 kb on + strand, within ECD_03383 at 3557.267 kb on + strand, within ECD_03383 at 3557.267 kb on + strand, within ECD_03383 at 3557.268 kb on - strand, within ECD_03383 at 3557.299 kb on + strand, within ECD_03383 at 3557.310 kb on + strand, within ECD_03383 at 3557.311 kb on - strand, within ECD_03383 at 3557.311 kb on - strand, within ECD_03383 at 3557.326 kb on - strand, within ECD_03383 at 3557.326 kb on - strand, within ECD_03383 at 3557.327 kb on + strand, within ECD_03383 at 3557.327 kb on + strand, within ECD_03383 at 3557.327 kb on + strand, within ECD_03383 at 3557.328 kb on - strand, within ECD_03383 at 3557.328 kb on - strand, within ECD_03383 at 3557.328 kb on - strand, within ECD_03383 at 3557.352 kb on + strand, within ECD_03383 at 3557.352 kb on + strand, within ECD_03383 at 3557.374 kb on - strand at 3557.401 kb on - strand at 3557.444 kb on - strand at 3557.669 kb on - strand at 3557.711 kb on + strand at 3557.823 kb on - strand, within ECD_03384 at 3557.823 kb on - strand, within ECD_03384 at 3557.920 kb on + strand, within ECD_03384 at 3557.975 kb on + strand, within ECD_03384 at 3557.994 kb on - strand, within ECD_03384 at 3558.050 kb on + strand, within ECD_03384 at 3558.089 kb on + strand, within ECD_03384 at 3558.246 kb on - strand, within ECD_03384 at 3558.277 kb on + strand, within ECD_03384 at 3558.277 kb on + strand, within ECD_03384 at 3558.277 kb on + strand, within ECD_03384
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1374 remove 3,556,221 - +1.0 3,556,238 + -0.5 3,556,238 + +0.2 3,556,253 + +1.2 3,556,284 - -0.8 3,556,459 - -0.2 3,556,491 - +0.6 3,556,491 - +0.2 3,556,529 + +0.0 3,556,530 - +0.3 3,556,530 - +0.4 3,556,623 + +0.8 3,556,624 - -1.0 3,556,627 + -0.6 3,556,628 - +0.1 3,556,628 - -0.1 3,556,660 + +0.3 3,556,660 + -0.0 3,556,661 - -0.0 3,556,661 - -0.0 3,556,664 - -0.4 3,556,672 + +0.3 3,556,778 + +0.1 3,556,779 - +1.0 3,556,799 + +0.3 3,556,839 - +0.2 3,556,847 + +0.3 3,556,861 + -0.5 3,556,991 - -0.4 3,556,991 - +0.3 3,557,029 + -0.3 3,557,030 - -1.4 3,557,030 - -0.8 3,557,096 + -0.7 3,557,097 - +0.1 3,557,228 - ECD_03383 0.23 +0.5 3,557,267 + ECD_03383 0.43 -0.4 3,557,267 + ECD_03383 0.43 +0.7 3,557,267 + ECD_03383 0.43 +0.2 3,557,268 - ECD_03383 0.44 +0.1 3,557,299 + ECD_03383 0.60 -0.1 3,557,310 + ECD_03383 0.66 +1.2 3,557,311 - ECD_03383 0.67 +0.3 3,557,311 - ECD_03383 0.67 +1.4 3,557,326 - ECD_03383 0.75 +0.4 3,557,326 - ECD_03383 0.75 -0.2 3,557,327 + ECD_03383 0.75 +0.4 3,557,327 + ECD_03383 0.75 -0.0 3,557,327 + ECD_03383 0.75 +0.0 3,557,328 - ECD_03383 0.76 +1.3 3,557,328 - ECD_03383 0.76 +0.6 3,557,328 - ECD_03383 0.76 +0.5 3,557,352 + ECD_03383 0.88 -0.5 3,557,352 + ECD_03383 0.88 +0.8 3,557,374 - -0.2 3,557,401 - +0.6 3,557,444 - +0.7 3,557,669 - -0.0 3,557,711 + -0.3 3,557,823 - ECD_03384 0.11 -0.6 3,557,823 - ECD_03384 0.11 +0.4 3,557,920 + ECD_03384 0.17 -0.3 3,557,975 + ECD_03384 0.21 -0.4 3,557,994 - ECD_03384 0.22 +0.3 3,558,050 + ECD_03384 0.26 +1.0 3,558,089 + ECD_03384 0.28 +0.1 3,558,246 - ECD_03384 0.38 -0.8 3,558,277 + ECD_03384 0.40 -1.3 3,558,277 + ECD_03384 0.40 -1.0 3,558,277 + ECD_03384 0.40 +1.3
Or see this region's nucleotide sequence