Strain Fitness in Escherichia coli BL21 around ECD_03076

Experiment: Laval1374

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_03075 and ECD_03076 are separated by 95 nucleotidesECD_03076 and ECD_03077 are separated by 581 nucleotides ECD_03075: ECD_03075 - aerobic respiration control sensor histidine protein kinase, cognate to two-component response regulators ArcA and RssB, at 3,219,189 to 3,221,525 _03075 ECD_03076: ECD_03076 - putative Fe-S oxidoreductase, Radical SAM superfamily protein, at 3,221,621 to 3,222,550 _03076 ECD_03077: ECD_03077 - glutamate synthase, large subunit, at 3,223,132 to 3,227,685 _03077 Position (kb) 3221 3222 3223Strain fitness (log2 ratio) -3 -2 -1 0 1at 3220.641 kb on - strand, within ECD_03075at 3220.777 kb on + strand, within ECD_03075at 3220.778 kb on - strand, within ECD_03075at 3220.781 kb on - strand, within ECD_03075at 3220.844 kb on - strand, within ECD_03075at 3220.860 kb on - strand, within ECD_03075at 3221.055 kb on + strand, within ECD_03075at 3221.193 kb on - strand, within ECD_03075at 3221.314 kb on + strandat 3221.315 kb on - strandat 3221.361 kb on - strandat 3221.413 kb on - strandat 3221.473 kb on - strandat 3221.494 kb on + strandat 3221.494 kb on + strandat 3221.495 kb on - strandat 3221.497 kb on + strandat 3221.497 kb on + strandat 3221.498 kb on - strandat 3221.498 kb on - strandat 3221.558 kb on - strandat 3221.577 kb on + strandat 3221.577 kb on + strandat 3221.577 kb on + strandat 3221.577 kb on + strandat 3221.578 kb on - strandat 3221.578 kb on - strandat 3221.578 kb on - strandat 3221.578 kb on - strandat 3221.622 kb on + strandat 3221.778 kb on + strand, within ECD_03076at 3221.778 kb on + strand, within ECD_03076at 3221.779 kb on - strand, within ECD_03076at 3221.779 kb on - strand, within ECD_03076at 3221.779 kb on - strand, within ECD_03076at 3221.779 kb on - strand, within ECD_03076at 3221.829 kb on + strand, within ECD_03076at 3221.829 kb on + strand, within ECD_03076at 3221.830 kb on - strand, within ECD_03076at 3221.899 kb on + strand, within ECD_03076at 3221.918 kb on + strand, within ECD_03076at 3221.999 kb on + strand, within ECD_03076at 3221.999 kb on + strand, within ECD_03076at 3221.999 kb on + strand, within ECD_03076at 3222.000 kb on - strand, within ECD_03076at 3222.000 kb on - strand, within ECD_03076at 3222.000 kb on - strand, within ECD_03076at 3222.046 kb on + strand, within ECD_03076at 3222.046 kb on + strand, within ECD_03076at 3222.046 kb on + strand, within ECD_03076at 3222.151 kb on + strand, within ECD_03076at 3222.151 kb on + strand, within ECD_03076at 3222.151 kb on + strand, within ECD_03076at 3222.151 kb on + strand, within ECD_03076at 3222.152 kb on - strand, within ECD_03076at 3222.224 kb on - strand, within ECD_03076at 3222.250 kb on - strand, within ECD_03076at 3222.250 kb on - strand, within ECD_03076at 3222.250 kb on - strand, within ECD_03076at 3222.253 kb on + strand, within ECD_03076at 3222.253 kb on + strand, within ECD_03076at 3222.253 kb on + strand, within ECD_03076at 3222.253 kb on + strand, within ECD_03076at 3222.253 kb on + strand, within ECD_03076at 3222.254 kb on - strand, within ECD_03076at 3222.254 kb on - strand, within ECD_03076at 3222.254 kb on - strand, within ECD_03076at 3222.254 kb on - strand, within ECD_03076at 3222.254 kb on - strand, within ECD_03076at 3222.254 kb on - strand, within ECD_03076at 3222.290 kb on - strand, within ECD_03076at 3222.291 kb on + strand, within ECD_03076at 3222.291 kb on + strand, within ECD_03076at 3222.312 kb on + strand, within ECD_03076at 3222.313 kb on - strand, within ECD_03076at 3222.313 kb on - strand, within ECD_03076at 3222.332 kb on + strand, within ECD_03076at 3222.407 kb on - strand, within ECD_03076at 3222.482 kb on - strandat 3222.482 kb on - strandat 3222.482 kb on - strandat 3222.482 kb on - strandat 3222.482 kb on - strandat 3222.526 kb on + strandat 3222.526 kb on + strandat 3222.527 kb on - strandat 3222.533 kb on + strandat 3222.845 kb on - strandat 3222.973 kb on + strandat 3222.974 kb on - strandat 3222.974 kb on - strandat 3222.985 kb on - strandat 3223.048 kb on + strandat 3223.052 kb on + strandat 3223.082 kb on + strandat 3223.224 kb on + strandat 3223.224 kb on + strandat 3223.224 kb on + strandat 3223.224 kb on + strandat 3223.231 kb on + strandat 3223.236 kb on + strandat 3223.254 kb on + strandat 3223.283 kb on + strandat 3223.283 kb on + strandat 3223.283 kb on + strandat 3223.283 kb on + strandat 3223.283 kb on + strandat 3223.284 kb on - strandat 3223.284 kb on - strandat 3223.307 kb on + strandat 3223.307 kb on + strandat 3223.314 kb on + strandat 3223.323 kb on - strandat 3223.465 kb on + strandat 3223.481 kb on + strandat 3223.481 kb on + strandat 3223.482 kb on - strandat 3223.492 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Laval1374
remove
3,220,641 - ECD_03075 0.62 +0.5
3,220,777 + ECD_03075 0.68 -1.5
3,220,778 - ECD_03075 0.68 -0.9
3,220,781 - ECD_03075 0.68 -0.9
3,220,844 - ECD_03075 0.71 -3.0
3,220,860 - ECD_03075 0.72 -1.9
3,221,055 + ECD_03075 0.80 -2.5
3,221,193 - ECD_03075 0.86 -0.9
3,221,314 + +0.1
3,221,315 - +1.1
3,221,361 - +0.1
3,221,413 - +0.7
3,221,473 - -0.4
3,221,494 + +0.1
3,221,494 + +0.1
3,221,495 - -0.0
3,221,497 + -0.7
3,221,497 + -0.7
3,221,498 - -0.3
3,221,498 - -0.5
3,221,558 - +0.1
3,221,577 + -0.5
3,221,577 + +0.4
3,221,577 + -0.3
3,221,577 + +0.2
3,221,578 - +0.1
3,221,578 - +0.3
3,221,578 - -0.1
3,221,578 - +0.2
3,221,622 + -0.3
3,221,778 + ECD_03076 0.17 -0.2
3,221,778 + ECD_03076 0.17 +1.0
3,221,779 - ECD_03076 0.17 -0.1
3,221,779 - ECD_03076 0.17 -0.6
3,221,779 - ECD_03076 0.17 +1.7
3,221,779 - ECD_03076 0.17 -0.5
3,221,829 + ECD_03076 0.22 -0.1
3,221,829 + ECD_03076 0.22 -0.0
3,221,830 - ECD_03076 0.22 -0.8
3,221,899 + ECD_03076 0.30 +0.5
3,221,918 + ECD_03076 0.32 -0.9
3,221,999 + ECD_03076 0.41 +0.1
3,221,999 + ECD_03076 0.41 -0.4
3,221,999 + ECD_03076 0.41 -0.4
3,222,000 - ECD_03076 0.41 -1.0
3,222,000 - ECD_03076 0.41 +0.3
3,222,000 - ECD_03076 0.41 +0.0
3,222,046 + ECD_03076 0.46 +0.1
3,222,046 + ECD_03076 0.46 -0.1
3,222,046 + ECD_03076 0.46 +0.7
3,222,151 + ECD_03076 0.57 -0.6
3,222,151 + ECD_03076 0.57 +0.9
3,222,151 + ECD_03076 0.57 -0.7
3,222,151 + ECD_03076 0.57 -0.2
3,222,152 - ECD_03076 0.57 -0.5
3,222,224 - ECD_03076 0.65 +0.0
3,222,250 - ECD_03076 0.68 -0.4
3,222,250 - ECD_03076 0.68 +0.0
3,222,250 - ECD_03076 0.68 -0.9
3,222,253 + ECD_03076 0.68 +0.6
3,222,253 + ECD_03076 0.68 +0.6
3,222,253 + ECD_03076 0.68 +0.3
3,222,253 + ECD_03076 0.68 +0.8
3,222,253 + ECD_03076 0.68 -0.2
3,222,254 - ECD_03076 0.68 -1.0
3,222,254 - ECD_03076 0.68 -1.1
3,222,254 - ECD_03076 0.68 -0.9
3,222,254 - ECD_03076 0.68 -1.2
3,222,254 - ECD_03076 0.68 +0.4
3,222,254 - ECD_03076 0.68 +0.0
3,222,290 - ECD_03076 0.72 +0.4
3,222,291 + ECD_03076 0.72 -1.1
3,222,291 + ECD_03076 0.72 -2.2
3,222,312 + ECD_03076 0.74 -0.1
3,222,313 - ECD_03076 0.74 +0.7
3,222,313 - ECD_03076 0.74 +0.0
3,222,332 + ECD_03076 0.76 +1.7
3,222,407 - ECD_03076 0.85 -0.9
3,222,482 - -0.0
3,222,482 - +1.3
3,222,482 - +0.2
3,222,482 - -0.5
3,222,482 - +0.5
3,222,526 + +0.6
3,222,526 + -0.4
3,222,527 - -0.4
3,222,533 + +0.1
3,222,845 - +0.1
3,222,973 + +0.4
3,222,974 - +0.2
3,222,974 - +0.8
3,222,985 - +0.1
3,223,048 + +1.5
3,223,052 + +1.0
3,223,082 + +0.5
3,223,224 + -1.2
3,223,224 + +0.6
3,223,224 + +0.2
3,223,224 + -0.3
3,223,231 + +0.1
3,223,236 + -0.3
3,223,254 + -0.0
3,223,283 + +0.6
3,223,283 + +1.2
3,223,283 + +0.5
3,223,283 + -1.2
3,223,283 + -0.1
3,223,284 - +0.5
3,223,284 - -0.7
3,223,307 + -0.2
3,223,307 + +0.4
3,223,314 + +0.2
3,223,323 - +0.4
3,223,465 + +0.4
3,223,481 + -0.0
3,223,481 + -0.3
3,223,482 - -0.6
3,223,492 - +0.6

Or see this region's nucleotide sequence