Experiment: Laval1374
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02937 and ECD_02938 are separated by 78 nucleotides ECD_02938 and ECD_t00056 are separated by 124 nucleotides ECD_t00056 and ECD_02939 are separated by 53 nucleotides
ECD_02937: ECD_02937 - RNA polymerase, sigma 70 (sigma D) factor, at 3,079,129 to 3,080,970
_02937
ECD_02938: ECD_02938 - G/U mismatch-specific DNA glycosylase; xanthine DNA glycosylase, at 3,081,049 to 3,081,555
_02938
ECD_t00056: ECD_t00056 - tRNA-Ile, at 3,081,680 to 3,081,755
_t00056
ECD_02939: ECD_02939 - putative siderophore interacting protein, at 3,081,809 to 3,082,573
_02939
Position (kb)
3081
3082 Strain fitness (log2 ratio)
-2
-1
0
1 at 3080.969 kb on - strand at 3081.302 kb on - strand, within ECD_02938 at 3081.431 kb on + strand, within ECD_02938 at 3081.431 kb on + strand, within ECD_02938 at 3081.432 kb on - strand, within ECD_02938 at 3081.432 kb on - strand, within ECD_02938 at 3081.432 kb on - strand, within ECD_02938 at 3081.432 kb on - strand, within ECD_02938 at 3081.434 kb on - strand, within ECD_02938 at 3081.434 kb on - strand, within ECD_02938 at 3081.556 kb on - strand at 3081.556 kb on - strand at 3081.560 kb on - strand at 3081.570 kb on - strand at 3081.758 kb on + strand at 3081.760 kb on + strand at 3081.760 kb on + strand at 3081.760 kb on + strand at 3081.760 kb on + strand at 3081.899 kb on - strand, within ECD_02939 at 3081.924 kb on + strand, within ECD_02939 at 3081.924 kb on + strand, within ECD_02939 at 3081.925 kb on - strand, within ECD_02939 at 3082.000 kb on + strand, within ECD_02939 at 3082.024 kb on - strand, within ECD_02939 at 3082.063 kb on + strand, within ECD_02939 at 3082.063 kb on + strand, within ECD_02939 at 3082.143 kb on + strand, within ECD_02939 at 3082.143 kb on + strand, within ECD_02939 at 3082.143 kb on + strand, within ECD_02939 at 3082.143 kb on + strand, within ECD_02939 at 3082.143 kb on + strand, within ECD_02939 at 3082.143 kb on + strand, within ECD_02939 at 3082.144 kb on - strand, within ECD_02939 at 3082.144 kb on - strand, within ECD_02939 at 3082.144 kb on - strand, within ECD_02939 at 3082.144 kb on - strand, within ECD_02939 at 3082.144 kb on - strand, within ECD_02939 at 3082.144 kb on - strand, within ECD_02939 at 3082.202 kb on - strand, within ECD_02939 at 3082.202 kb on - strand, within ECD_02939 at 3082.262 kb on - strand, within ECD_02939 at 3082.289 kb on + strand, within ECD_02939 at 3082.290 kb on - strand, within ECD_02939 at 3082.300 kb on - strand, within ECD_02939 at 3082.300 kb on - strand, within ECD_02939 at 3082.311 kb on + strand, within ECD_02939 at 3082.311 kb on + strand, within ECD_02939 at 3082.439 kb on - strand, within ECD_02939 at 3082.505 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1374 remove 3,080,969 - -0.2 3,081,302 - ECD_02938 0.50 +0.1 3,081,431 + ECD_02938 0.75 -0.1 3,081,431 + ECD_02938 0.75 -0.9 3,081,432 - ECD_02938 0.76 +0.1 3,081,432 - ECD_02938 0.76 -0.3 3,081,432 - ECD_02938 0.76 -0.1 3,081,432 - ECD_02938 0.76 -0.2 3,081,434 - ECD_02938 0.76 -0.3 3,081,434 - ECD_02938 0.76 -1.1 3,081,556 - -1.5 3,081,556 - -0.1 3,081,560 - +0.5 3,081,570 - +0.9 3,081,758 + -0.6 3,081,760 + -0.6 3,081,760 + +0.0 3,081,760 + +0.3 3,081,760 + -0.1 3,081,899 - ECD_02939 0.12 +1.0 3,081,924 + ECD_02939 0.15 +0.2 3,081,924 + ECD_02939 0.15 +0.4 3,081,925 - ECD_02939 0.15 +0.1 3,082,000 + ECD_02939 0.25 -0.6 3,082,024 - ECD_02939 0.28 -1.1 3,082,063 + ECD_02939 0.33 +0.3 3,082,063 + ECD_02939 0.33 +0.5 3,082,143 + ECD_02939 0.44 -0.9 3,082,143 + ECD_02939 0.44 -0.9 3,082,143 + ECD_02939 0.44 -0.3 3,082,143 + ECD_02939 0.44 +0.8 3,082,143 + ECD_02939 0.44 -0.9 3,082,143 + ECD_02939 0.44 +0.1 3,082,144 - ECD_02939 0.44 -1.1 3,082,144 - ECD_02939 0.44 -0.3 3,082,144 - ECD_02939 0.44 +0.4 3,082,144 - ECD_02939 0.44 -0.5 3,082,144 - ECD_02939 0.44 -0.2 3,082,144 - ECD_02939 0.44 -0.8 3,082,202 - ECD_02939 0.51 -2.5 3,082,202 - ECD_02939 0.51 -0.0 3,082,262 - ECD_02939 0.59 -0.6 3,082,289 + ECD_02939 0.63 +0.8 3,082,290 - ECD_02939 0.63 -0.5 3,082,300 - ECD_02939 0.64 +0.1 3,082,300 - ECD_02939 0.64 -0.8 3,082,311 + ECD_02939 0.66 +0.5 3,082,311 + ECD_02939 0.66 +0.1 3,082,439 - ECD_02939 0.82 -0.2 3,082,505 + +0.6
Or see this region's nucleotide sequence