Strain Fitness in Escherichia coli BL21 around ECD_02811

Experiment: Laval1374

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02798 and ECD_02811 are separated by 464 nucleotidesECD_02811 and ECD_02812 are separated by 237 nucleotidesECD_02812 and ECD_04360 are separated by 149 nucleotides ECD_02798: ECD_02798 - hypothetical protein, at 2,942,440 to 2,943,342 _02798 ECD_02811: ECD_02811 - hypothetical protein, at 2,943,807 to 2,944,376 _02811 ECD_02812: ECD_02812 - hypothetical protein, at 2,944,614 to 2,944,907 _02812 ECD_04360: ECD_04360 - hypothetical protein, at 2,945,057 to 2,945,182 _04360 Position (kb) 2943 2944 2945Strain fitness (log2 ratio) -1 0 1 2at 2943.201 kb on + strand, within ECD_02798at 2943.318 kb on + strandat 2943.352 kb on + strandat 2943.352 kb on + strandat 2943.352 kb on + strandat 2943.352 kb on + strandat 2943.353 kb on - strandat 2943.354 kb on + strandat 2943.354 kb on + strandat 2943.354 kb on + strandat 2943.420 kb on + strandat 2943.421 kb on - strandat 2943.426 kb on + strandat 2943.426 kb on + strandat 2943.427 kb on - strandat 2943.427 kb on - strandat 2943.546 kb on - strandat 2943.593 kb on + strandat 2943.807 kb on - strandat 2943.807 kb on - strandat 2943.807 kb on - strandat 2943.861 kb on - strandat 2943.898 kb on - strand, within ECD_02811at 2944.219 kb on + strand, within ECD_02811at 2944.219 kb on + strand, within ECD_02811at 2944.219 kb on + strand, within ECD_02811at 2944.220 kb on - strand, within ECD_02811at 2944.220 kb on - strand, within ECD_02811at 2944.220 kb on - strand, within ECD_02811at 2944.220 kb on - strand, within ECD_02811at 2944.268 kb on + strand, within ECD_02811at 2944.272 kb on + strand, within ECD_02811at 2944.272 kb on + strand, within ECD_02811at 2944.273 kb on - strand, within ECD_02811at 2944.331 kb on + strandat 2944.339 kb on + strandat 2944.340 kb on - strandat 2944.340 kb on - strandat 2944.517 kb on + strandat 2944.656 kb on + strand, within ECD_02812at 2944.656 kb on + strand, within ECD_02812at 2944.656 kb on + strand, within ECD_02812at 2944.656 kb on + strand, within ECD_02812at 2944.656 kb on + strand, within ECD_02812at 2944.656 kb on + strand, within ECD_02812at 2944.656 kb on + strand, within ECD_02812at 2944.657 kb on - strand, within ECD_02812at 2944.657 kb on - strand, within ECD_02812at 2944.679 kb on + strand, within ECD_02812at 2944.679 kb on + strand, within ECD_02812at 2944.680 kb on - strand, within ECD_02812at 2944.680 kb on - strand, within ECD_02812at 2944.772 kb on - strand, within ECD_02812at 2944.835 kb on + strand, within ECD_02812at 2944.835 kb on + strand, within ECD_02812at 2944.836 kb on - strand, within ECD_02812at 2944.836 kb on - strand, within ECD_02812at 2944.899 kb on + strandat 2944.900 kb on - strandat 2944.900 kb on - strandat 2944.954 kb on - strandat 2944.954 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Laval1374
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2,943,201 + ECD_02798 0.84 -0.5
2,943,318 + +0.1
2,943,352 + +0.4
2,943,352 + +0.3
2,943,352 + +0.6
2,943,352 + -0.6
2,943,353 - +0.8
2,943,354 + -0.8
2,943,354 + +1.3
2,943,354 + -0.4
2,943,420 + +1.1
2,943,421 - +0.1
2,943,426 + +0.4
2,943,426 + -0.9
2,943,427 - -0.4
2,943,427 - +0.6
2,943,546 - +0.1
2,943,593 + -0.2
2,943,807 - -0.2
2,943,807 - -0.0
2,943,807 - -0.3
2,943,861 - +0.7
2,943,898 - ECD_02811 0.16 -0.7
2,944,219 + ECD_02811 0.72 +0.9
2,944,219 + ECD_02811 0.72 +0.3
2,944,219 + ECD_02811 0.72 +0.4
2,944,220 - ECD_02811 0.72 +0.4
2,944,220 - ECD_02811 0.72 +1.9
2,944,220 - ECD_02811 0.72 +0.4
2,944,220 - ECD_02811 0.72 +0.1
2,944,268 + ECD_02811 0.81 +0.1
2,944,272 + ECD_02811 0.82 +0.7
2,944,272 + ECD_02811 0.82 -0.2
2,944,273 - ECD_02811 0.82 +1.1
2,944,331 + +0.1
2,944,339 + -0.2
2,944,340 - +0.4
2,944,340 - +0.7
2,944,517 + -0.8
2,944,656 + ECD_02812 0.14 +0.8
2,944,656 + ECD_02812 0.14 -0.5
2,944,656 + ECD_02812 0.14 -1.5
2,944,656 + ECD_02812 0.14 -1.0
2,944,656 + ECD_02812 0.14 -0.5
2,944,656 + ECD_02812 0.14 +0.2
2,944,656 + ECD_02812 0.14 +0.4
2,944,657 - ECD_02812 0.15 -0.7
2,944,657 - ECD_02812 0.15 -0.4
2,944,679 + ECD_02812 0.22 -0.6
2,944,679 + ECD_02812 0.22 -0.2
2,944,680 - ECD_02812 0.22 +0.5
2,944,680 - ECD_02812 0.22 +0.3
2,944,772 - ECD_02812 0.54 +0.3
2,944,835 + ECD_02812 0.75 -0.2
2,944,835 + ECD_02812 0.75 -0.3
2,944,836 - ECD_02812 0.76 -0.5
2,944,836 - ECD_02812 0.76 +0.8
2,944,899 + +0.5
2,944,900 - -0.2
2,944,900 - +0.1
2,944,954 - +0.0
2,944,954 - +0.4

Or see this region's nucleotide sequence