Strain Fitness in Escherichia coli BL21 around ECD_01352

Experiment: Laval1374

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01350 and ECD_01351 overlap by 4 nucleotidesECD_01351 and ECD_01352 are separated by 110 nucleotidesECD_01352 and ECD_01353 are separated by 207 nucleotides ECD_01350: ECD_01350 - DUF333 family putative lipoprotein, at 1,416,617 to 1,416,883 _01350 ECD_01351: ECD_01351 - heat-inducible lipoprotein involved in novobiocin resistance, at 1,416,880 to 1,417,302 _01351 ECD_01352: ECD_01352 - fermentative D-lactate dehydrogenase, NAD-dependent, at 1,417,413 to 1,418,402 _01352 ECD_01353: ECD_01353 - putative membrane-anchored protein, function unknown, at 1,418,610 to 1,421,249 _01353 Position (kb) 1417 1418 1419Strain fitness (log2 ratio) -1 0 1at 1416.576 kb on + strandat 1417.250 kb on - strand, within ECD_01351at 1417.459 kb on - strandat 1417.841 kb on - strand, within ECD_01352at 1417.980 kb on - strand, within ECD_01352at 1417.980 kb on - strand, within ECD_01352at 1417.980 kb on - strand, within ECD_01352at 1418.191 kb on + strand, within ECD_01352at 1418.191 kb on + strand, within ECD_01352at 1418.385 kb on - strandat 1418.602 kb on - strandat 1418.624 kb on + strandat 1418.739 kb on - strandat 1419.128 kb on + strand, within ECD_01353

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Per-strain Table

Position Strand Gene LocusTag Fraction Laval1374
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1,416,576 + -1.0
1,417,250 - ECD_01351 0.87 -0.4
1,417,459 - +0.4
1,417,841 - ECD_01352 0.43 -0.5
1,417,980 - ECD_01352 0.57 +0.4
1,417,980 - ECD_01352 0.57 -1.4
1,417,980 - ECD_01352 0.57 -1.0
1,418,191 + ECD_01352 0.79 -0.6
1,418,191 + ECD_01352 0.79 -0.5
1,418,385 - +0.1
1,418,602 - -0.4
1,418,624 + +0.1
1,418,739 - -0.2
1,419,128 + ECD_01353 0.20 +0.1

Or see this region's nucleotide sequence