Experiment: Laval1374
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01350 and ECD_01351 overlap by 4 nucleotides ECD_01351 and ECD_01352 are separated by 110 nucleotides ECD_01352 and ECD_01353 are separated by 207 nucleotides
ECD_01350: ECD_01350 - DUF333 family putative lipoprotein, at 1,416,617 to 1,416,883
_01350
ECD_01351: ECD_01351 - heat-inducible lipoprotein involved in novobiocin resistance, at 1,416,880 to 1,417,302
_01351
ECD_01352: ECD_01352 - fermentative D-lactate dehydrogenase, NAD-dependent, at 1,417,413 to 1,418,402
_01352
ECD_01353: ECD_01353 - putative membrane-anchored protein, function unknown, at 1,418,610 to 1,421,249
_01353
Position (kb)
1417
1418
1419 Strain fitness (log2 ratio)
-1
0
1 at 1416.576 kb on + strand at 1417.250 kb on - strand, within ECD_01351 at 1417.459 kb on - strand at 1417.841 kb on - strand, within ECD_01352 at 1417.980 kb on - strand, within ECD_01352 at 1417.980 kb on - strand, within ECD_01352 at 1417.980 kb on - strand, within ECD_01352 at 1418.191 kb on + strand, within ECD_01352 at 1418.191 kb on + strand, within ECD_01352 at 1418.385 kb on - strand at 1418.602 kb on - strand at 1418.624 kb on + strand at 1418.739 kb on - strand at 1419.128 kb on + strand, within ECD_01353
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1374 remove 1,416,576 + -1.0 1,417,250 - ECD_01351 0.87 -0.4 1,417,459 - +0.4 1,417,841 - ECD_01352 0.43 -0.5 1,417,980 - ECD_01352 0.57 +0.4 1,417,980 - ECD_01352 0.57 -1.4 1,417,980 - ECD_01352 0.57 -1.0 1,418,191 + ECD_01352 0.79 -0.6 1,418,191 + ECD_01352 0.79 -0.5 1,418,385 - +0.1 1,418,602 - -0.4 1,418,624 + +0.1 1,418,739 - -0.2 1,419,128 + ECD_01353 0.20 +0.1
Or see this region's nucleotide sequence