Experiment: Laval1374
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01235 and ECD_01236 are separated by 11 nucleotides ECD_01236 and ECD_01237 are separated by 3 nucleotides
ECD_01235: ECD_01235 - tryptophan synthase, beta subunit, at 1,302,814 to 1,304,007
_01235
ECD_01236: ECD_01236 - indole-3-glycerolphosphate synthetase and N-(5-phosphoribosyl)anthranilate isomerase, at 1,304,019 to 1,305,377
_01236
ECD_01237: ECD_01237 - fused glutamine amidotransferase (component II) of anthranilate synthase/anthranilate phosphoribosyl transferase, at 1,305,381 to 1,306,976
_01237
Position (kb)
1304
1305
1306 Strain fitness (log2 ratio)
-1
0
1
2 at 1303.449 kb on + strand, within ECD_01235 at 1303.451 kb on + strand, within ECD_01235 at 1303.452 kb on - strand, within ECD_01235 at 1303.611 kb on - strand, within ECD_01235 at 1303.611 kb on - strand, within ECD_01235 at 1303.788 kb on - strand, within ECD_01235 at 1303.813 kb on - strand, within ECD_01235 at 1303.854 kb on - strand, within ECD_01235 at 1303.961 kb on + strand at 1303.962 kb on - strand at 1303.962 kb on - strand at 1303.962 kb on - strand at 1303.962 kb on - strand at 1304.145 kb on - strand at 1304.256 kb on - strand, within ECD_01236 at 1304.357 kb on - strand, within ECD_01236 at 1304.357 kb on - strand, within ECD_01236 at 1304.357 kb on - strand, within ECD_01236 at 1304.409 kb on - strand, within ECD_01236 at 1304.546 kb on - strand, within ECD_01236 at 1304.564 kb on - strand, within ECD_01236 at 1304.724 kb on - strand, within ECD_01236 at 1304.724 kb on - strand, within ECD_01236 at 1304.973 kb on + strand, within ECD_01236 at 1304.973 kb on + strand, within ECD_01236 at 1304.974 kb on - strand, within ECD_01236 at 1304.993 kb on - strand, within ECD_01236 at 1305.039 kb on - strand, within ECD_01236 at 1305.383 kb on - strand at 1305.436 kb on - strand at 1305.493 kb on - strand at 1305.650 kb on - strand, within ECD_01237 at 1305.943 kb on - strand, within ECD_01237 at 1305.943 kb on - strand, within ECD_01237 at 1306.112 kb on + strand, within ECD_01237 at 1306.165 kb on + strand, within ECD_01237
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1374 remove 1,303,449 + ECD_01235 0.53 +0.2 1,303,451 + ECD_01235 0.53 +1.0 1,303,452 - ECD_01235 0.53 +0.8 1,303,611 - ECD_01235 0.67 -0.4 1,303,611 - ECD_01235 0.67 -0.9 1,303,788 - ECD_01235 0.82 -1.2 1,303,813 - ECD_01235 0.84 +0.8 1,303,854 - ECD_01235 0.87 +2.1 1,303,961 + +0.8 1,303,962 - +0.8 1,303,962 - +1.2 1,303,962 - -0.7 1,303,962 - -0.7 1,304,145 - +0.0 1,304,256 - ECD_01236 0.17 +1.1 1,304,357 - ECD_01236 0.25 +0.5 1,304,357 - ECD_01236 0.25 -0.2 1,304,357 - ECD_01236 0.25 +0.1 1,304,409 - ECD_01236 0.29 +0.5 1,304,546 - ECD_01236 0.39 +0.1 1,304,564 - ECD_01236 0.40 +0.8 1,304,724 - ECD_01236 0.52 +0.5 1,304,724 - ECD_01236 0.52 +0.8 1,304,973 + ECD_01236 0.70 +0.3 1,304,973 + ECD_01236 0.70 -0.4 1,304,974 - ECD_01236 0.70 +0.2 1,304,993 - ECD_01236 0.72 +1.2 1,305,039 - ECD_01236 0.75 -0.5 1,305,383 - -0.4 1,305,436 - -0.1 1,305,493 - +0.0 1,305,650 - ECD_01237 0.17 -0.2 1,305,943 - ECD_01237 0.35 +0.1 1,305,943 - ECD_01237 0.35 +0.5 1,306,112 + ECD_01237 0.46 +0.7 1,306,165 + ECD_01237 0.49 -0.2
Or see this region's nucleotide sequence