Strain Fitness in Escherichia coli BL21 around ECD_00560

Experiment: Laval1374

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_00559 and ECD_00560 are separated by 374 nucleotidesECD_00560 and ECD_00561 are separated by 9 nucleotides ECD_00559: ECD_00559 - ferrienterobactin ABC transporter periplasmic binding protein, at 584,041 to 584,997 _00559 ECD_00560: ECD_00560 - isochorismate synthase 1, at 585,372 to 586,547 _00560 ECD_00561: ECD_00561 - 2,3-dihydroxybenzoate-AMP ligase component of enterobactin synthase multienzyme complex, at 586,557 to 588,167 _00561 Position (kb) 585 586 587Strain fitness (log2 ratio) -1 0 1at 584.402 kb on + strand, within ECD_00559at 584.559 kb on - strand, within ECD_00559at 584.693 kb on + strand, within ECD_00559at 584.694 kb on - strand, within ECD_00559at 584.853 kb on + strand, within ECD_00559at 584.878 kb on - strand, within ECD_00559at 584.963 kb on - strandat 585.017 kb on - strandat 585.289 kb on - strandat 585.377 kb on + strandat 585.377 kb on + strandat 585.378 kb on - strandat 585.440 kb on + strandat 585.636 kb on + strand, within ECD_00560at 585.636 kb on + strand, within ECD_00560at 585.636 kb on + strand, within ECD_00560at 585.636 kb on + strand, within ECD_00560at 585.637 kb on - strand, within ECD_00560at 585.637 kb on - strand, within ECD_00560at 585.637 kb on - strand, within ECD_00560at 585.639 kb on - strand, within ECD_00560at 585.789 kb on - strand, within ECD_00560at 585.971 kb on - strand, within ECD_00560at 586.151 kb on - strand, within ECD_00560at 586.179 kb on - strand, within ECD_00560at 586.221 kb on - strand, within ECD_00560at 586.517 kb on + strandat 586.745 kb on + strand, within ECD_00561at 586.789 kb on + strand, within ECD_00561at 586.790 kb on - strand, within ECD_00561at 586.816 kb on - strand, within ECD_00561at 586.817 kb on + strand, within ECD_00561at 587.175 kb on + strand, within ECD_00561at 587.176 kb on - strand, within ECD_00561at 587.178 kb on + strand, within ECD_00561at 587.179 kb on - strand, within ECD_00561at 587.181 kb on + strand, within ECD_00561at 587.182 kb on - strand, within ECD_00561at 587.182 kb on - strand, within ECD_00561at 587.195 kb on + strand, within ECD_00561at 587.259 kb on - strand, within ECD_00561at 587.262 kb on + strand, within ECD_00561at 587.262 kb on + strand, within ECD_00561at 587.263 kb on - strand, within ECD_00561at 587.263 kb on - strand, within ECD_00561at 587.263 kb on - strand, within ECD_00561at 587.471 kb on - strand, within ECD_00561

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Laval1374
remove
584,402 + ECD_00559 0.38 -0.2
584,559 - ECD_00559 0.54 +0.1
584,693 + ECD_00559 0.68 -0.5
584,694 - ECD_00559 0.68 -0.4
584,853 + ECD_00559 0.85 -1.4
584,878 - ECD_00559 0.87 +0.5
584,963 - -0.1
585,017 - -0.8
585,289 - -0.5
585,377 + -0.5
585,377 + -1.1
585,378 - -0.6
585,440 + +0.8
585,636 + ECD_00560 0.22 -0.7
585,636 + ECD_00560 0.22 -0.1
585,636 + ECD_00560 0.22 -0.2
585,636 + ECD_00560 0.22 -0.5
585,637 - ECD_00560 0.23 -0.3
585,637 - ECD_00560 0.23 +0.2
585,637 - ECD_00560 0.23 -1.3
585,639 - ECD_00560 0.23 +0.7
585,789 - ECD_00560 0.35 -0.3
585,971 - ECD_00560 0.51 -0.7
586,151 - ECD_00560 0.66 +0.5
586,179 - ECD_00560 0.69 +0.5
586,221 - ECD_00560 0.72 -0.7
586,517 + -0.4
586,745 + ECD_00561 0.12 -1.7
586,789 + ECD_00561 0.14 -0.6
586,790 - ECD_00561 0.14 -0.4
586,816 - ECD_00561 0.16 -0.7
586,817 + ECD_00561 0.16 -0.7
587,175 + ECD_00561 0.38 -1.1
587,176 - ECD_00561 0.38 -0.4
587,178 + ECD_00561 0.39 -0.7
587,179 - ECD_00561 0.39 +0.1
587,181 + ECD_00561 0.39 -0.2
587,182 - ECD_00561 0.39 +0.6
587,182 - ECD_00561 0.39 +0.8
587,195 + ECD_00561 0.40 +0.1
587,259 - ECD_00561 0.44 -0.5
587,262 + ECD_00561 0.44 +0.2
587,262 + ECD_00561 0.44 -0.5
587,263 - ECD_00561 0.44 +0.9
587,263 - ECD_00561 0.44 +1.0
587,263 - ECD_00561 0.44 -0.6
587,471 - ECD_00561 0.57 +0.4

Or see this region's nucleotide sequence