Experiment: Laval1374
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00451 and ECD_00452 are separated by 743 nucleotides ECD_00452 and ECD_00453 are separated by 115 nucleotides
ECD_00450: ECD_00450 - conserved protein, rhs-like protein, at 497,095 to 497,805
_00450
ECD_00451: ECD_00451 - hypothetical protein, at 497,786 to 498,046
_00451
ECD_00452: ECD_00452 - putative DNA-binding transcriptional regulator, at 498,790 to 499,161
_00452
ECD_00453: ECD_00453 - tRNA 2-selenouridine synthase, selenophosphate-dependent, at 499,277 to 500,371
_00453
Position (kb) 498
499
500 Strain fitness (log2 ratio) -1
0
1 at 498.873 kb on + strand, within ECD_00452 at 498.969 kb on + strand, within ECD_00452 at 498.996 kb on + strand, within ECD_00452 at 499.043 kb on + strand, within ECD_00452 at 499.050 kb on + strand, within ECD_00452 at 499.202 kb on - strand at 499.258 kb on - strand at 499.266 kb on + strand at 499.266 kb on + strand at 499.266 kb on + strand at 499.266 kb on + strand at 499.267 kb on - strand at 499.539 kb on + strand, within ECD_00453 at 499.566 kb on + strand, within ECD_00453 at 499.647 kb on - strand, within ECD_00453 at 499.941 kb on - strand, within ECD_00453 at 500.056 kb on + strand, within ECD_00453 at 500.057 kb on - strand, within ECD_00453 at 500.092 kb on + strand, within ECD_00453 at 500.093 kb on - strand, within ECD_00453
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1374 remove 498,873 + ECD_00452 0.22 +1.4 498,969 + ECD_00452 0.48 +0.5 498,996 + ECD_00452 0.55 +0.0 499,043 + ECD_00452 0.68 +1.5 499,050 + ECD_00452 0.70 +0.5 499,202 - +0.3 499,258 - +1.5 499,266 + -0.9 499,266 + -1.1 499,266 + +0.1 499,266 + -0.2 499,267 - +0.2 499,539 + ECD_00453 0.24 -0.4 499,566 + ECD_00453 0.26 +1.5 499,647 - ECD_00453 0.34 +0.7 499,941 - ECD_00453 0.61 -0.5 500,056 + ECD_00453 0.71 -0.1 500,057 - ECD_00453 0.71 -0.2 500,092 + ECD_00453 0.74 +1.5 500,093 - ECD_00453 0.75 -0.3
Or see this region's nucleotide sequence