Experiment: Laval1374
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00245 and ECD_00246 are separated by 416 nucleotides ECD_00246 and ECD_00247 are separated by 246 nucleotides ECD_00247 and ECD_00248 are separated by 312 nucleotides
ECD_00245: ECD_00245 - PaoABC aldehyde oxidoreductase, 2Fe-2S subunit, at 272,071 to 272,760
_00245
ECD_00246: ECD_00246 - DUF1440 family inner membrane acid resistance protein, at 273,177 to 273,791
_00246
ECD_00247: ECD_00247 - UPF0153 cysteine cluster protein, at 274,038 to 274,367
_00247
ECD_00248: ECD_00248 - ECP production pilus chaperone, at 274,680 to 275,390
_00248
Position (kb) 273
274 Strain fitness (log2 ratio) -1
0
1 at 272.337 kb on + strand, within ECD_00245 at 272.338 kb on - strand, within ECD_00245 at 272.338 kb on - strand, within ECD_00245 at 272.582 kb on - strand, within ECD_00245 at 272.599 kb on - strand, within ECD_00245 at 272.626 kb on - strand, within ECD_00245 at 272.626 kb on - strand, within ECD_00245 at 272.865 kb on + strand at 272.897 kb on + strand at 272.898 kb on - strand at 272.942 kb on - strand at 273.056 kb on + strand at 273.057 kb on - strand at 273.148 kb on + strand at 273.161 kb on + strand at 273.176 kb on + strand at 273.450 kb on + strand, within ECD_00246 at 273.452 kb on + strand, within ECD_00246 at 273.473 kb on + strand, within ECD_00246 at 273.694 kb on + strand, within ECD_00246 at 273.746 kb on + strand at 273.883 kb on + strand at 273.953 kb on + strand at 274.006 kb on + strand at 274.028 kb on + strand at 274.029 kb on - strand at 274.033 kb on + strand at 274.041 kb on + strand at 274.148 kb on - strand, within ECD_00247 at 274.149 kb on + strand, within ECD_00247 at 274.246 kb on - strand, within ECD_00247 at 274.272 kb on - strand, within ECD_00247 at 274.378 kb on + strand at 274.379 kb on - strand at 274.379 kb on - strand at 274.409 kb on - strand at 274.415 kb on + strand at 274.415 kb on + strand at 274.415 kb on + strand at 274.416 kb on - strand at 274.419 kb on + strand at 274.419 kb on + strand at 274.420 kb on - strand at 274.420 kb on - strand at 274.428 kb on - strand at 274.493 kb on + strand at 274.497 kb on + strand at 274.500 kb on + strand at 274.501 kb on - strand at 274.511 kb on + strand at 274.512 kb on - strand at 274.523 kb on + strand at 274.523 kb on + strand at 274.524 kb on - strand at 274.739 kb on + strand at 274.771 kb on - strand, within ECD_00248
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1374 remove 272,337 + ECD_00245 0.39 +0.4 272,338 - ECD_00245 0.39 -1.0 272,338 - ECD_00245 0.39 +0.2 272,582 - ECD_00245 0.74 -0.3 272,599 - ECD_00245 0.77 +0.0 272,626 - ECD_00245 0.80 -0.4 272,626 - ECD_00245 0.80 -0.8 272,865 + +0.5 272,897 + -0.9 272,898 - -0.8 272,942 - +0.0 273,056 + -0.3 273,057 - -0.1 273,148 + +0.0 273,161 + -0.1 273,176 + -0.1 273,450 + ECD_00246 0.44 +0.7 273,452 + ECD_00246 0.45 +0.5 273,473 + ECD_00246 0.48 +0.7 273,694 + ECD_00246 0.84 -0.2 273,746 + +0.1 273,883 + +0.0 273,953 + +1.0 274,006 + -0.5 274,028 + -0.2 274,029 - +0.4 274,033 + +0.1 274,041 + +0.7 274,148 - ECD_00247 0.33 +0.8 274,149 + ECD_00247 0.34 +0.1 274,246 - ECD_00247 0.63 +0.3 274,272 - ECD_00247 0.71 +0.1 274,378 + +0.0 274,379 - +0.2 274,379 - -0.5 274,409 - +0.6 274,415 + -0.2 274,415 + +1.0 274,415 + +0.1 274,416 - +0.0 274,419 + -0.1 274,419 + -0.7 274,420 - +0.4 274,420 - +0.8 274,428 - +0.3 274,493 + -0.7 274,497 + +0.7 274,500 + +0.8 274,501 - +0.3 274,511 + -0.7 274,512 - -0.2 274,523 + -0.4 274,523 + -0.4 274,524 - +0.1 274,739 + -0.6 274,771 - ECD_00248 0.13 -0.6
Or see this region's nucleotide sequence