Strain Fitness in Escherichia coli BL21 around ECD_t00056

Experiment: Bas58

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02937 and ECD_02938 are separated by 78 nucleotidesECD_02938 and ECD_t00056 are separated by 124 nucleotidesECD_t00056 and ECD_02939 are separated by 53 nucleotides ECD_02937: ECD_02937 - RNA polymerase, sigma 70 (sigma D) factor, at 3,079,129 to 3,080,970 _02937 ECD_02938: ECD_02938 - G/U mismatch-specific DNA glycosylase; xanthine DNA glycosylase, at 3,081,049 to 3,081,555 _02938 ECD_t00056: ECD_t00056 - tRNA-Ile, at 3,081,680 to 3,081,755 _t00056 ECD_02939: ECD_02939 - putative siderophore interacting protein, at 3,081,809 to 3,082,573 _02939 Position (kb) 3081 3082Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3080.969 kb on - strandat 3081.302 kb on - strand, within ECD_02938at 3081.431 kb on + strand, within ECD_02938at 3081.431 kb on + strand, within ECD_02938at 3081.432 kb on - strand, within ECD_02938at 3081.432 kb on - strand, within ECD_02938at 3081.432 kb on - strand, within ECD_02938at 3081.432 kb on - strand, within ECD_02938at 3081.434 kb on - strand, within ECD_02938at 3081.434 kb on - strand, within ECD_02938at 3081.556 kb on - strandat 3081.556 kb on - strandat 3081.560 kb on - strandat 3081.570 kb on - strandat 3081.758 kb on + strandat 3081.760 kb on + strandat 3081.760 kb on + strandat 3081.760 kb on + strandat 3081.760 kb on + strandat 3081.899 kb on - strand, within ECD_02939at 3081.924 kb on + strand, within ECD_02939at 3081.924 kb on + strand, within ECD_02939at 3081.925 kb on - strand, within ECD_02939at 3082.000 kb on + strand, within ECD_02939at 3082.024 kb on - strand, within ECD_02939at 3082.063 kb on + strand, within ECD_02939at 3082.063 kb on + strand, within ECD_02939at 3082.143 kb on + strand, within ECD_02939at 3082.143 kb on + strand, within ECD_02939at 3082.143 kb on + strand, within ECD_02939at 3082.143 kb on + strand, within ECD_02939at 3082.143 kb on + strand, within ECD_02939at 3082.143 kb on + strand, within ECD_02939at 3082.144 kb on - strand, within ECD_02939at 3082.144 kb on - strand, within ECD_02939at 3082.144 kb on - strand, within ECD_02939at 3082.144 kb on - strand, within ECD_02939at 3082.144 kb on - strand, within ECD_02939at 3082.144 kb on - strand, within ECD_02939at 3082.202 kb on - strand, within ECD_02939at 3082.202 kb on - strand, within ECD_02939at 3082.262 kb on - strand, within ECD_02939at 3082.289 kb on + strand, within ECD_02939at 3082.290 kb on - strand, within ECD_02939at 3082.300 kb on - strand, within ECD_02939at 3082.300 kb on - strand, within ECD_02939at 3082.311 kb on + strand, within ECD_02939at 3082.311 kb on + strand, within ECD_02939at 3082.439 kb on - strand, within ECD_02939at 3082.505 kb on + strandat 3082.665 kb on - strandat 3082.679 kb on + strandat 3082.681 kb on + strandat 3082.719 kb on + strandat 3082.720 kb on - strandat 3082.720 kb on - strandat 3082.720 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas58
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3,080,969 - -2.1
3,081,302 - ECD_02938 0.50 +0.3
3,081,431 + ECD_02938 0.75 -0.7
3,081,431 + ECD_02938 0.75 +0.0
3,081,432 - ECD_02938 0.76 -0.1
3,081,432 - ECD_02938 0.76 -0.9
3,081,432 - ECD_02938 0.76 -0.3
3,081,432 - ECD_02938 0.76 -0.4
3,081,434 - ECD_02938 0.76 -1.2
3,081,434 - ECD_02938 0.76 -0.4
3,081,556 - +1.0
3,081,556 - -1.2
3,081,560 - +0.2
3,081,570 - +3.3
3,081,758 + +1.8
3,081,760 + -1.1
3,081,760 + -0.1
3,081,760 + -0.2
3,081,760 + -0.3
3,081,899 - ECD_02939 0.12 +1.7
3,081,924 + ECD_02939 0.15 -0.6
3,081,924 + ECD_02939 0.15 +0.5
3,081,925 - ECD_02939 0.15 +1.6
3,082,000 + ECD_02939 0.25 +0.2
3,082,024 - ECD_02939 0.28 -1.0
3,082,063 + ECD_02939 0.33 +0.5
3,082,063 + ECD_02939 0.33 +0.0
3,082,143 + ECD_02939 0.44 +0.4
3,082,143 + ECD_02939 0.44 +0.0
3,082,143 + ECD_02939 0.44 +1.5
3,082,143 + ECD_02939 0.44 +0.5
3,082,143 + ECD_02939 0.44 -0.2
3,082,143 + ECD_02939 0.44 -1.3
3,082,144 - ECD_02939 0.44 +1.8
3,082,144 - ECD_02939 0.44 -0.3
3,082,144 - ECD_02939 0.44 +0.0
3,082,144 - ECD_02939 0.44 -0.6
3,082,144 - ECD_02939 0.44 -0.1
3,082,144 - ECD_02939 0.44 +1.3
3,082,202 - ECD_02939 0.51 +0.9
3,082,202 - ECD_02939 0.51 -0.0
3,082,262 - ECD_02939 0.59 -1.8
3,082,289 + ECD_02939 0.63 +1.1
3,082,290 - ECD_02939 0.63 +3.5
3,082,300 - ECD_02939 0.64 +2.6
3,082,300 - ECD_02939 0.64 -0.0
3,082,311 + ECD_02939 0.66 +0.1
3,082,311 + ECD_02939 0.66 -0.4
3,082,439 - ECD_02939 0.82 +0.0
3,082,505 + -0.3
3,082,665 - -1.7
3,082,679 + -0.1
3,082,681 + -0.2
3,082,719 + -0.5
3,082,720 - +2.5
3,082,720 - +2.2
3,082,720 - +1.2

Or see this region's nucleotide sequence