Experiment: Bas58
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_04172 and ECD_04173 are separated by 55 nucleotides ECD_04173 and ECD_04174 are separated by 11 nucleotides
ECD_04172: ECD_04172 - putative methyltransferase, at 4,440,940 to 4,441,686
_04172
ECD_04173: ECD_04173 - GNAT family putative N-acetyltransferase, at 4,441,742 to 4,442,287
_04173
ECD_04174: ECD_04174 - UPF0386 family protein, at 4,442,299 to 4,442,556
_04174
Position (kb)
4441
4442
4443 Strain fitness (log2 ratio)
-1
0
1
2 at 4440.813 kb on + strand at 4440.813 kb on + strand at 4440.813 kb on + strand at 4440.813 kb on + strand at 4440.813 kb on + strand at 4440.813 kb on + strand at 4440.813 kb on + strand at 4440.813 kb on + strand at 4440.814 kb on - strand at 4440.814 kb on - strand at 4440.814 kb on - strand at 4440.814 kb on - strand at 4440.814 kb on - strand at 4440.814 kb on - strand at 4440.814 kb on - strand at 4440.814 kb on - strand at 4440.814 kb on - strand at 4440.814 kb on - strand at 4440.814 kb on - strand at 4440.814 kb on - strand at 4440.814 kb on - strand at 4440.825 kb on + strand at 4440.825 kb on + strand at 4440.858 kb on + strand at 4440.858 kb on + strand at 4440.859 kb on - strand at 4440.862 kb on + strand at 4440.862 kb on + strand at 4440.862 kb on + strand at 4440.863 kb on - strand at 4440.863 kb on - strand at 4440.863 kb on - strand at 4440.876 kb on + strand at 4440.877 kb on - strand at 4440.877 kb on - strand at 4440.877 kb on - strand at 4440.924 kb on + strand at 4440.999 kb on - strand at 4441.018 kb on + strand, within ECD_04172 at 4441.231 kb on + strand, within ECD_04172 at 4441.276 kb on - strand, within ECD_04172 at 4441.395 kb on - strand, within ECD_04172 at 4441.417 kb on - strand, within ECD_04172 at 4441.671 kb on + strand at 4441.672 kb on - strand at 4441.672 kb on - strand at 4441.739 kb on + strand at 4441.739 kb on + strand at 4441.917 kb on + strand, within ECD_04173 at 4441.917 kb on + strand, within ECD_04173 at 4441.917 kb on + strand, within ECD_04173 at 4441.917 kb on + strand, within ECD_04173 at 4441.917 kb on + strand, within ECD_04173 at 4441.918 kb on - strand, within ECD_04173 at 4441.918 kb on - strand, within ECD_04173 at 4441.918 kb on - strand, within ECD_04173 at 4441.918 kb on - strand, within ECD_04173 at 4442.016 kb on + strand, within ECD_04173 at 4442.016 kb on + strand, within ECD_04173 at 4442.171 kb on + strand, within ECD_04173 at 4442.172 kb on - strand, within ECD_04173 at 4442.260 kb on + strand at 4442.279 kb on + strand at 4442.280 kb on - strand at 4442.329 kb on - strand, within ECD_04174 at 4442.451 kb on - strand, within ECD_04174 at 4442.499 kb on + strand, within ECD_04174 at 4442.511 kb on + strand, within ECD_04174 at 4442.524 kb on + strand, within ECD_04174 at 4442.524 kb on + strand, within ECD_04174 at 4442.525 kb on - strand, within ECD_04174 at 4442.529 kb on + strand, within ECD_04174 at 4442.529 kb on + strand, within ECD_04174 at 4442.529 kb on + strand, within ECD_04174 at 4442.529 kb on + strand, within ECD_04174 at 4442.530 kb on - strand, within ECD_04174 at 4442.530 kb on - strand, within ECD_04174 at 4442.530 kb on - strand, within ECD_04174 at 4442.530 kb on - strand, within ECD_04174 at 4442.530 kb on - strand, within ECD_04174 at 4442.530 kb on - strand, within ECD_04174 at 4442.557 kb on - strand at 4442.568 kb on + strand at 4442.568 kb on + strand at 4442.569 kb on - strand at 4442.569 kb on - strand at 4442.569 kb on - strand at 4442.572 kb on + strand at 4442.681 kb on + strand at 4442.682 kb on - strand at 4442.682 kb on - strand at 4442.721 kb on + strand at 4442.746 kb on + strand at 4442.747 kb on - strand at 4442.747 kb on - strand at 4442.747 kb on - strand at 4442.747 kb on - strand at 4442.761 kb on + strand at 4442.762 kb on - strand at 4442.898 kb on - strand at 4442.928 kb on + strand at 4443.113 kb on - strand at 4443.113 kb on - strand at 4443.147 kb on - strand at 4443.155 kb on - strand at 4443.217 kb on - strand at 4443.243 kb on + strand at 4443.253 kb on + strand at 4443.254 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas58 remove 4,440,813 + +0.6 4,440,813 + +0.9 4,440,813 + +0.9 4,440,813 + -0.0 4,440,813 + +0.2 4,440,813 + +2.3 4,440,813 + +0.3 4,440,813 + -0.4 4,440,814 - -0.3 4,440,814 - -0.6 4,440,814 - -0.2 4,440,814 - -0.2 4,440,814 - +0.9 4,440,814 - +0.3 4,440,814 - -0.4 4,440,814 - +0.4 4,440,814 - -1.3 4,440,814 - -0.3 4,440,814 - -0.2 4,440,814 - +0.4 4,440,814 - -0.9 4,440,825 + -0.3 4,440,825 + +0.4 4,440,858 + +0.3 4,440,858 + +1.1 4,440,859 - +0.5 4,440,862 + -1.5 4,440,862 + +0.7 4,440,862 + -0.1 4,440,863 - +0.3 4,440,863 - +0.4 4,440,863 - -0.1 4,440,876 + +1.4 4,440,877 - +1.1 4,440,877 - +0.3 4,440,877 - -0.7 4,440,924 + +0.6 4,440,999 - +1.4 4,441,018 + ECD_04172 0.10 -1.6 4,441,231 + ECD_04172 0.39 +0.4 4,441,276 - ECD_04172 0.45 +0.4 4,441,395 - ECD_04172 0.61 +0.1 4,441,417 - ECD_04172 0.64 -0.2 4,441,671 + +0.5 4,441,672 - +0.6 4,441,672 - +0.3 4,441,739 + +0.4 4,441,739 + +0.7 4,441,917 + ECD_04173 0.32 +0.2 4,441,917 + ECD_04173 0.32 -0.0 4,441,917 + ECD_04173 0.32 -0.1 4,441,917 + ECD_04173 0.32 +0.6 4,441,917 + ECD_04173 0.32 +0.3 4,441,918 - ECD_04173 0.32 +0.8 4,441,918 - ECD_04173 0.32 +0.8 4,441,918 - ECD_04173 0.32 -0.5 4,441,918 - ECD_04173 0.32 -0.4 4,442,016 + ECD_04173 0.50 -0.1 4,442,016 + ECD_04173 0.50 -0.2 4,442,171 + ECD_04173 0.79 +0.3 4,442,172 - ECD_04173 0.79 +1.7 4,442,260 + +0.2 4,442,279 + -0.4 4,442,280 - -0.7 4,442,329 - ECD_04174 0.12 +1.0 4,442,451 - ECD_04174 0.59 -1.3 4,442,499 + ECD_04174 0.78 +0.9 4,442,511 + ECD_04174 0.82 +1.1 4,442,524 + ECD_04174 0.87 -0.6 4,442,524 + ECD_04174 0.87 +0.5 4,442,525 - ECD_04174 0.88 -0.1 4,442,529 + ECD_04174 0.89 -0.1 4,442,529 + ECD_04174 0.89 -1.6 4,442,529 + ECD_04174 0.89 +0.3 4,442,529 + ECD_04174 0.89 +0.1 4,442,530 - ECD_04174 0.90 +0.2 4,442,530 - ECD_04174 0.90 +0.1 4,442,530 - ECD_04174 0.90 +0.3 4,442,530 - ECD_04174 0.90 +1.6 4,442,530 - ECD_04174 0.90 -0.3 4,442,530 - ECD_04174 0.90 +0.5 4,442,557 - +1.1 4,442,568 + +0.3 4,442,568 + -1.2 4,442,569 - +0.6 4,442,569 - -0.2 4,442,569 - +0.7 4,442,572 + +0.6 4,442,681 + +1.1 4,442,682 - -0.3 4,442,682 - +0.5 4,442,721 + +0.4 4,442,746 + -0.0 4,442,747 - -0.1 4,442,747 - +0.8 4,442,747 - +2.0 4,442,747 - +0.7 4,442,761 + +0.8 4,442,762 - +0.6 4,442,898 - +0.3 4,442,928 + +0.4 4,443,113 - -0.8 4,443,113 - -0.3 4,443,147 - -0.0 4,443,155 - +0.4 4,443,217 - +0.1 4,443,243 + +0.2 4,443,253 + -1.5 4,443,254 - +0.5
Or see this region's nucleotide sequence