Strain Fitness in Escherichia coli BL21 around ECD_03827

Experiment: Bas58

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03826 and ECD_03827 are separated by 348 nucleotidesECD_03827 and ECD_03828 are separated by 328 nucleotides ECD_03826: ECD_03826 - Bifunctional aspartokinase/homoserine dehydrogenase 2, at 4,038,382 to 4,040,814 _03826 ECD_03827: ECD_03827 - 5,10-methylenetetrahydrofolate reductase, at 4,041,163 to 4,042,053 _03827 ECD_03828: ECD_03828 - catalase-peroxidase HPI, heme b-containing, at 4,042,382 to 4,044,562 _03828 Position (kb) 4041 4042 4043Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4040.176 kb on + strand, within ECD_03826at 4040.176 kb on + strand, within ECD_03826at 4040.176 kb on + strand, within ECD_03826at 4040.177 kb on - strand, within ECD_03826at 4040.247 kb on + strand, within ECD_03826at 4040.248 kb on - strand, within ECD_03826at 4040.248 kb on - strand, within ECD_03826at 4040.248 kb on - strand, within ECD_03826at 4040.437 kb on + strand, within ECD_03826at 4040.437 kb on + strand, within ECD_03826at 4040.437 kb on + strand, within ECD_03826at 4040.459 kb on + strand, within ECD_03826at 4040.460 kb on - strand, within ECD_03826at 4040.460 kb on - strand, within ECD_03826at 4040.630 kb on + strandat 4040.631 kb on - strandat 4040.839 kb on + strandat 4040.937 kb on + strandat 4040.938 kb on - strandat 4040.941 kb on + strandat 4040.941 kb on + strandat 4040.941 kb on + strandat 4040.949 kb on + strandat 4040.950 kb on - strandat 4040.950 kb on - strandat 4040.955 kb on - strandat 4040.957 kb on - strandat 4041.133 kb on + strandat 4041.133 kb on + strandat 4041.133 kb on + strandat 4041.133 kb on + strandat 4041.133 kb on + strandat 4041.133 kb on + strandat 4041.133 kb on + strandat 4041.133 kb on + strandat 4041.134 kb on - strandat 4041.134 kb on - strandat 4041.134 kb on - strandat 4041.134 kb on - strandat 4041.134 kb on - strandat 4041.134 kb on - strandat 4041.134 kb on - strandat 4041.134 kb on - strandat 4041.134 kb on - strandat 4041.134 kb on - strandat 4041.135 kb on + strandat 4041.135 kb on + strandat 4041.135 kb on + strandat 4041.135 kb on + strandat 4041.135 kb on + strandat 4041.135 kb on + strandat 4041.136 kb on - strandat 4041.136 kb on - strandat 4041.136 kb on - strandat 4041.139 kb on + strandat 4041.139 kb on + strandat 4041.140 kb on - strandat 4041.140 kb on - strandat 4041.140 kb on - strandat 4041.157 kb on + strandat 4041.157 kb on + strandat 4041.157 kb on + strandat 4041.157 kb on + strandat 4041.162 kb on + strandat 4041.163 kb on - strandat 4041.163 kb on - strandat 4041.307 kb on - strand, within ECD_03827at 4041.307 kb on - strand, within ECD_03827at 4041.340 kb on + strand, within ECD_03827at 4041.340 kb on + strand, within ECD_03827at 4041.341 kb on - strand, within ECD_03827at 4041.341 kb on - strand, within ECD_03827at 4041.381 kb on + strand, within ECD_03827at 4041.384 kb on + strand, within ECD_03827at 4041.429 kb on + strand, within ECD_03827at 4041.429 kb on + strand, within ECD_03827at 4041.429 kb on + strand, within ECD_03827at 4041.429 kb on + strand, within ECD_03827at 4041.430 kb on - strand, within ECD_03827at 4041.430 kb on - strand, within ECD_03827at 4041.430 kb on - strand, within ECD_03827at 4041.492 kb on + strand, within ECD_03827at 4041.540 kb on + strand, within ECD_03827at 4041.553 kb on + strand, within ECD_03827at 4041.553 kb on + strand, within ECD_03827at 4041.578 kb on + strand, within ECD_03827at 4041.578 kb on + strand, within ECD_03827at 4041.807 kb on + strand, within ECD_03827at 4041.807 kb on + strand, within ECD_03827at 4041.852 kb on + strand, within ECD_03827at 4041.852 kb on + strand, within ECD_03827at 4041.927 kb on + strand, within ECD_03827at 4041.939 kb on + strand, within ECD_03827at 4041.940 kb on - strand, within ECD_03827at 4041.985 kb on + strandat 4041.986 kb on - strandat 4041.986 kb on - strandat 4041.986 kb on - strandat 4042.051 kb on + strandat 4042.051 kb on + strandat 4042.051 kb on + strandat 4042.051 kb on + strandat 4042.051 kb on + strandat 4042.052 kb on - strandat 4042.055 kb on + strandat 4042.055 kb on + strandat 4042.056 kb on - strandat 4042.056 kb on - strandat 4042.140 kb on - strandat 4042.170 kb on - strandat 4042.170 kb on - strandat 4042.189 kb on - strandat 4042.262 kb on + strandat 4042.282 kb on + strandat 4042.282 kb on + strandat 4042.283 kb on - strandat 4042.283 kb on - strandat 4042.287 kb on - strandat 4042.287 kb on - strandat 4042.323 kb on + strandat 4042.325 kb on + strandat 4042.326 kb on - strandat 4042.336 kb on + strandat 4042.346 kb on + strandat 4042.365 kb on + strandat 4042.519 kb on - strandat 4042.532 kb on - strandat 4042.596 kb on - strandat 4042.667 kb on + strand, within ECD_03828at 4042.791 kb on + strand, within ECD_03828at 4042.792 kb on - strand, within ECD_03828at 4042.792 kb on - strand, within ECD_03828at 4042.792 kb on - strand, within ECD_03828at 4042.792 kb on - strand, within ECD_03828at 4042.792 kb on - strand, within ECD_03828at 4042.792 kb on - strand, within ECD_03828at 4042.792 kb on - strand, within ECD_03828at 4042.838 kb on + strand, within ECD_03828at 4042.838 kb on + strand, within ECD_03828at 4042.839 kb on - strand, within ECD_03828at 4042.870 kb on + strand, within ECD_03828at 4042.912 kb on + strand, within ECD_03828at 4042.912 kb on + strand, within ECD_03828

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas58
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4,040,176 + ECD_03826 0.74 +2.2
4,040,176 + ECD_03826 0.74 +1.5
4,040,176 + ECD_03826 0.74 +0.2
4,040,177 - ECD_03826 0.74 -0.8
4,040,247 + ECD_03826 0.77 -0.3
4,040,248 - ECD_03826 0.77 +0.6
4,040,248 - ECD_03826 0.77 -1.2
4,040,248 - ECD_03826 0.77 +0.4
4,040,437 + ECD_03826 0.84 -0.0
4,040,437 + ECD_03826 0.84 -0.5
4,040,437 + ECD_03826 0.84 +0.4
4,040,459 + ECD_03826 0.85 -0.5
4,040,460 - ECD_03826 0.85 -0.1
4,040,460 - ECD_03826 0.85 -0.1
4,040,630 + -0.8
4,040,631 - +1.6
4,040,839 + +0.5
4,040,937 + +0.2
4,040,938 - +0.9
4,040,941 + +0.2
4,040,941 + -0.0
4,040,941 + +0.8
4,040,949 + +0.0
4,040,950 - +0.2
4,040,950 - -1.7
4,040,955 - +0.2
4,040,957 - +0.2
4,041,133 + +0.6
4,041,133 + -0.4
4,041,133 + -1.0
4,041,133 + +1.1
4,041,133 + -0.4
4,041,133 + -0.5
4,041,133 + -0.7
4,041,133 + +0.6
4,041,134 - -0.1
4,041,134 - -0.0
4,041,134 - +0.5
4,041,134 - +0.1
4,041,134 - -0.7
4,041,134 - -0.8
4,041,134 - +0.1
4,041,134 - -0.4
4,041,134 - -0.7
4,041,134 - +0.7
4,041,135 + +0.0
4,041,135 + +0.1
4,041,135 + +1.4
4,041,135 + +0.3
4,041,135 + +0.7
4,041,135 + +3.1
4,041,136 - +1.9
4,041,136 - +0.1
4,041,136 - -0.2
4,041,139 + -1.0
4,041,139 + -0.1
4,041,140 - -0.4
4,041,140 - -0.3
4,041,140 - -1.5
4,041,157 + +0.5
4,041,157 + +0.8
4,041,157 + -0.0
4,041,157 + +0.5
4,041,162 + +0.3
4,041,163 - -0.6
4,041,163 - -0.2
4,041,307 - ECD_03827 0.16 +0.8
4,041,307 - ECD_03827 0.16 +0.8
4,041,340 + ECD_03827 0.20 -0.5
4,041,340 + ECD_03827 0.20 -0.3
4,041,341 - ECD_03827 0.20 -0.4
4,041,341 - ECD_03827 0.20 +0.1
4,041,381 + ECD_03827 0.24 -0.6
4,041,384 + ECD_03827 0.25 -0.1
4,041,429 + ECD_03827 0.30 +1.2
4,041,429 + ECD_03827 0.30 +0.3
4,041,429 + ECD_03827 0.30 +0.3
4,041,429 + ECD_03827 0.30 +0.4
4,041,430 - ECD_03827 0.30 +0.1
4,041,430 - ECD_03827 0.30 -0.7
4,041,430 - ECD_03827 0.30 +0.1
4,041,492 + ECD_03827 0.37 -0.4
4,041,540 + ECD_03827 0.42 +0.5
4,041,553 + ECD_03827 0.44 -0.1
4,041,553 + ECD_03827 0.44 -2.0
4,041,578 + ECD_03827 0.47 +0.9
4,041,578 + ECD_03827 0.47 -0.1
4,041,807 + ECD_03827 0.72 +0.3
4,041,807 + ECD_03827 0.72 +0.5
4,041,852 + ECD_03827 0.77 -1.1
4,041,852 + ECD_03827 0.77 -0.2
4,041,927 + ECD_03827 0.86 -1.1
4,041,939 + ECD_03827 0.87 -1.4
4,041,940 - ECD_03827 0.87 +0.3
4,041,985 + +1.0
4,041,986 - -0.2
4,041,986 - +0.4
4,041,986 - -1.2
4,042,051 + -1.3
4,042,051 + +0.3
4,042,051 + -0.0
4,042,051 + +0.5
4,042,051 + +0.7
4,042,052 - +0.2
4,042,055 + +0.1
4,042,055 + -0.1
4,042,056 - -0.4
4,042,056 - -0.2
4,042,140 - +0.3
4,042,170 - -0.2
4,042,170 - -0.6
4,042,189 - +0.2
4,042,262 + -0.1
4,042,282 + +0.1
4,042,282 + +1.4
4,042,283 - +0.4
4,042,283 - +2.7
4,042,287 - +1.0
4,042,287 - +1.8
4,042,323 + -0.0
4,042,325 + +0.1
4,042,326 - -0.3
4,042,336 + +0.4
4,042,346 + +1.4
4,042,365 + +0.6
4,042,519 - +0.0
4,042,532 - -0.5
4,042,596 - +1.4
4,042,667 + ECD_03828 0.13 +0.6
4,042,791 + ECD_03828 0.19 +0.2
4,042,792 - ECD_03828 0.19 +0.5
4,042,792 - ECD_03828 0.19 +2.2
4,042,792 - ECD_03828 0.19 -0.3
4,042,792 - ECD_03828 0.19 -0.9
4,042,792 - ECD_03828 0.19 +1.1
4,042,792 - ECD_03828 0.19 +0.2
4,042,792 - ECD_03828 0.19 +1.1
4,042,838 + ECD_03828 0.21 +0.1
4,042,838 + ECD_03828 0.21 +0.1
4,042,839 - ECD_03828 0.21 -0.3
4,042,870 + ECD_03828 0.22 -0.3
4,042,912 + ECD_03828 0.24 +0.7
4,042,912 + ECD_03828 0.24 +0.0

Or see this region's nucleotide sequence