Experiment: Bas58
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03825 and ECD_03826 are separated by 2 nucleotides ECD_03826 and ECD_03827 are separated by 348 nucleotides
ECD_03825: ECD_03825 - cystathionine gamma-synthase, PLP-dependent, at 4,037,219 to 4,038,379
_03825
ECD_03826: ECD_03826 - Bifunctional aspartokinase/homoserine dehydrogenase 2, at 4,038,382 to 4,040,814
_03826
ECD_03827: ECD_03827 - 5,10-methylenetetrahydrofolate reductase, at 4,041,163 to 4,042,053
_03827
Position (kb)
4038
4039
4040
4041 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 4037.527 kb on + strand, within ECD_03825 at 4037.646 kb on + strand, within ECD_03825 at 4037.647 kb on - strand, within ECD_03825 at 4037.659 kb on + strand, within ECD_03825 at 4037.738 kb on - strand, within ECD_03825 at 4037.748 kb on + strand, within ECD_03825 at 4037.761 kb on - strand, within ECD_03825 at 4037.778 kb on + strand, within ECD_03825 at 4037.778 kb on + strand, within ECD_03825 at 4037.778 kb on + strand, within ECD_03825 at 4037.779 kb on - strand, within ECD_03825 at 4037.813 kb on + strand, within ECD_03825 at 4037.814 kb on - strand, within ECD_03825 at 4037.835 kb on + strand, within ECD_03825 at 4037.835 kb on + strand, within ECD_03825 at 4037.835 kb on + strand, within ECD_03825 at 4037.836 kb on - strand, within ECD_03825 at 4037.857 kb on + strand, within ECD_03825 at 4037.858 kb on - strand, within ECD_03825 at 4037.858 kb on - strand, within ECD_03825 at 4037.933 kb on + strand, within ECD_03825 at 4037.934 kb on - strand, within ECD_03825 at 4037.934 kb on - strand, within ECD_03825 at 4037.943 kb on + strand, within ECD_03825 at 4037.943 kb on + strand, within ECD_03825 at 4037.944 kb on - strand, within ECD_03825 at 4038.012 kb on - strand, within ECD_03825 at 4038.044 kb on + strand, within ECD_03825 at 4038.044 kb on + strand, within ECD_03825 at 4038.045 kb on - strand, within ECD_03825 at 4038.045 kb on - strand, within ECD_03825 at 4038.216 kb on + strand, within ECD_03825 at 4038.301 kb on + strand at 4038.334 kb on - strand at 4038.494 kb on - strand at 4038.569 kb on + strand at 4038.729 kb on + strand, within ECD_03826 at 4038.730 kb on - strand, within ECD_03826 at 4038.800 kb on + strand, within ECD_03826 at 4038.801 kb on - strand, within ECD_03826 at 4038.804 kb on + strand, within ECD_03826 at 4038.804 kb on + strand, within ECD_03826 at 4038.805 kb on - strand, within ECD_03826 at 4038.805 kb on - strand, within ECD_03826 at 4038.960 kb on + strand, within ECD_03826 at 4038.961 kb on - strand, within ECD_03826 at 4038.961 kb on - strand, within ECD_03826 at 4038.961 kb on - strand, within ECD_03826 at 4039.085 kb on + strand, within ECD_03826 at 4039.087 kb on + strand, within ECD_03826 at 4039.087 kb on + strand, within ECD_03826 at 4039.087 kb on + strand, within ECD_03826 at 4039.088 kb on - strand, within ECD_03826 at 4039.088 kb on - strand, within ECD_03826 at 4039.194 kb on + strand, within ECD_03826 at 4039.199 kb on + strand, within ECD_03826 at 4039.200 kb on - strand, within ECD_03826 at 4039.242 kb on + strand, within ECD_03826 at 4039.242 kb on + strand, within ECD_03826 at 4039.308 kb on + strand, within ECD_03826 at 4039.309 kb on - strand, within ECD_03826 at 4039.309 kb on - strand, within ECD_03826 at 4039.440 kb on - strand, within ECD_03826 at 4039.444 kb on - strand, within ECD_03826 at 4039.523 kb on + strand, within ECD_03826 at 4039.523 kb on + strand, within ECD_03826 at 4039.648 kb on - strand, within ECD_03826 at 4039.766 kb on + strand, within ECD_03826 at 4039.843 kb on - strand, within ECD_03826 at 4039.900 kb on + strand, within ECD_03826 at 4039.901 kb on - strand, within ECD_03826 at 4039.929 kb on - strand, within ECD_03826 at 4039.999 kb on + strand, within ECD_03826 at 4039.999 kb on + strand, within ECD_03826 at 4040.009 kb on + strand, within ECD_03826 at 4040.009 kb on + strand, within ECD_03826 at 4040.053 kb on + strand, within ECD_03826 at 4040.054 kb on - strand, within ECD_03826 at 4040.054 kb on - strand, within ECD_03826 at 4040.054 kb on - strand, within ECD_03826 at 4040.086 kb on - strand, within ECD_03826 at 4040.124 kb on + strand, within ECD_03826 at 4040.124 kb on + strand, within ECD_03826 at 4040.124 kb on + strand, within ECD_03826 at 4040.125 kb on - strand, within ECD_03826 at 4040.125 kb on - strand, within ECD_03826 at 4040.125 kb on - strand, within ECD_03826 at 4040.125 kb on - strand, within ECD_03826 at 4040.176 kb on + strand, within ECD_03826 at 4040.176 kb on + strand, within ECD_03826 at 4040.176 kb on + strand, within ECD_03826 at 4040.177 kb on - strand, within ECD_03826 at 4040.247 kb on + strand, within ECD_03826 at 4040.248 kb on - strand, within ECD_03826 at 4040.248 kb on - strand, within ECD_03826 at 4040.248 kb on - strand, within ECD_03826 at 4040.437 kb on + strand, within ECD_03826 at 4040.437 kb on + strand, within ECD_03826 at 4040.437 kb on + strand, within ECD_03826 at 4040.459 kb on + strand, within ECD_03826 at 4040.460 kb on - strand, within ECD_03826 at 4040.460 kb on - strand, within ECD_03826 at 4040.630 kb on + strand at 4040.631 kb on - strand at 4040.839 kb on + strand at 4040.937 kb on + strand at 4040.938 kb on - strand at 4040.941 kb on + strand at 4040.941 kb on + strand at 4040.941 kb on + strand at 4040.949 kb on + strand at 4040.950 kb on - strand at 4040.950 kb on - strand at 4040.955 kb on - strand at 4040.957 kb on - strand at 4041.133 kb on + strand at 4041.133 kb on + strand at 4041.133 kb on + strand at 4041.133 kb on + strand at 4041.133 kb on + strand at 4041.133 kb on + strand at 4041.133 kb on + strand at 4041.133 kb on + strand at 4041.134 kb on - strand at 4041.134 kb on - strand at 4041.134 kb on - strand at 4041.134 kb on - strand at 4041.134 kb on - strand at 4041.134 kb on - strand at 4041.134 kb on - strand at 4041.134 kb on - strand at 4041.134 kb on - strand at 4041.134 kb on - strand at 4041.135 kb on + strand at 4041.135 kb on + strand at 4041.135 kb on + strand at 4041.135 kb on + strand at 4041.135 kb on + strand at 4041.135 kb on + strand at 4041.136 kb on - strand at 4041.136 kb on - strand at 4041.136 kb on - strand at 4041.139 kb on + strand at 4041.139 kb on + strand at 4041.140 kb on - strand at 4041.140 kb on - strand at 4041.140 kb on - strand at 4041.157 kb on + strand at 4041.157 kb on + strand at 4041.157 kb on + strand at 4041.157 kb on + strand at 4041.162 kb on + strand at 4041.163 kb on - strand at 4041.163 kb on - strand at 4041.307 kb on - strand, within ECD_03827 at 4041.307 kb on - strand, within ECD_03827 at 4041.340 kb on + strand, within ECD_03827 at 4041.340 kb on + strand, within ECD_03827 at 4041.341 kb on - strand, within ECD_03827 at 4041.341 kb on - strand, within ECD_03827 at 4041.381 kb on + strand, within ECD_03827 at 4041.384 kb on + strand, within ECD_03827 at 4041.429 kb on + strand, within ECD_03827 at 4041.429 kb on + strand, within ECD_03827 at 4041.429 kb on + strand, within ECD_03827 at 4041.429 kb on + strand, within ECD_03827 at 4041.430 kb on - strand, within ECD_03827 at 4041.430 kb on - strand, within ECD_03827 at 4041.430 kb on - strand, within ECD_03827 at 4041.492 kb on + strand, within ECD_03827 at 4041.540 kb on + strand, within ECD_03827 at 4041.553 kb on + strand, within ECD_03827 at 4041.553 kb on + strand, within ECD_03827 at 4041.578 kb on + strand, within ECD_03827 at 4041.578 kb on + strand, within ECD_03827 at 4041.807 kb on + strand, within ECD_03827 at 4041.807 kb on + strand, within ECD_03827
Per-strain Table
Position Strand Gene LocusTag Fraction Bas58 remove 4,037,527 + ECD_03825 0.27 +2.0 4,037,646 + ECD_03825 0.37 +1.0 4,037,647 - ECD_03825 0.37 +0.6 4,037,659 + ECD_03825 0.38 +0.1 4,037,738 - ECD_03825 0.45 +0.0 4,037,748 + ECD_03825 0.46 +0.6 4,037,761 - ECD_03825 0.47 +0.1 4,037,778 + ECD_03825 0.48 -0.0 4,037,778 + ECD_03825 0.48 +1.0 4,037,778 + ECD_03825 0.48 +0.2 4,037,779 - ECD_03825 0.48 -0.0 4,037,813 + ECD_03825 0.51 -0.4 4,037,814 - ECD_03825 0.51 +0.1 4,037,835 + ECD_03825 0.53 +0.3 4,037,835 + ECD_03825 0.53 +0.9 4,037,835 + ECD_03825 0.53 +0.4 4,037,836 - ECD_03825 0.53 -0.2 4,037,857 + ECD_03825 0.55 +0.9 4,037,858 - ECD_03825 0.55 +1.6 4,037,858 - ECD_03825 0.55 +0.0 4,037,933 + ECD_03825 0.61 +0.4 4,037,934 - ECD_03825 0.62 -0.6 4,037,934 - ECD_03825 0.62 +2.4 4,037,943 + ECD_03825 0.62 -0.8 4,037,943 + ECD_03825 0.62 -0.5 4,037,944 - ECD_03825 0.62 -0.2 4,038,012 - ECD_03825 0.68 +0.9 4,038,044 + ECD_03825 0.71 -0.0 4,038,044 + ECD_03825 0.71 +0.6 4,038,045 - ECD_03825 0.71 -1.7 4,038,045 - ECD_03825 0.71 +0.4 4,038,216 + ECD_03825 0.86 +0.5 4,038,301 + +0.3 4,038,334 - -0.2 4,038,494 - -0.6 4,038,569 + +0.1 4,038,729 + ECD_03826 0.14 -0.2 4,038,730 - ECD_03826 0.14 +0.4 4,038,800 + ECD_03826 0.17 -0.4 4,038,801 - ECD_03826 0.17 -0.4 4,038,804 + ECD_03826 0.17 +0.0 4,038,804 + ECD_03826 0.17 +0.2 4,038,805 - ECD_03826 0.17 -0.4 4,038,805 - ECD_03826 0.17 -0.4 4,038,960 + ECD_03826 0.24 -0.3 4,038,961 - ECD_03826 0.24 +0.3 4,038,961 - ECD_03826 0.24 +0.3 4,038,961 - ECD_03826 0.24 +1.3 4,039,085 + ECD_03826 0.29 -0.3 4,039,087 + ECD_03826 0.29 -0.3 4,039,087 + ECD_03826 0.29 +0.0 4,039,087 + ECD_03826 0.29 -2.3 4,039,088 - ECD_03826 0.29 +0.3 4,039,088 - ECD_03826 0.29 +1.7 4,039,194 + ECD_03826 0.33 +1.0 4,039,199 + ECD_03826 0.34 +0.0 4,039,200 - ECD_03826 0.34 -0.5 4,039,242 + ECD_03826 0.35 -0.8 4,039,242 + ECD_03826 0.35 -0.5 4,039,308 + ECD_03826 0.38 -0.7 4,039,309 - ECD_03826 0.38 +0.1 4,039,309 - ECD_03826 0.38 -1.5 4,039,440 - ECD_03826 0.43 -0.9 4,039,444 - ECD_03826 0.44 +0.2 4,039,523 + ECD_03826 0.47 -1.6 4,039,523 + ECD_03826 0.47 +0.5 4,039,648 - ECD_03826 0.52 -0.3 4,039,766 + ECD_03826 0.57 +0.0 4,039,843 - ECD_03826 0.60 +0.0 4,039,900 + ECD_03826 0.62 -0.2 4,039,901 - ECD_03826 0.62 -0.0 4,039,929 - ECD_03826 0.64 -0.7 4,039,999 + ECD_03826 0.66 +0.2 4,039,999 + ECD_03826 0.66 +0.1 4,040,009 + ECD_03826 0.67 -1.4 4,040,009 + ECD_03826 0.67 -0.9 4,040,053 + ECD_03826 0.69 -0.4 4,040,054 - ECD_03826 0.69 -1.2 4,040,054 - ECD_03826 0.69 -0.3 4,040,054 - ECD_03826 0.69 -1.1 4,040,086 - ECD_03826 0.70 -0.1 4,040,124 + ECD_03826 0.72 +0.1 4,040,124 + ECD_03826 0.72 +0.6 4,040,124 + ECD_03826 0.72 -0.5 4,040,125 - ECD_03826 0.72 +1.6 4,040,125 - ECD_03826 0.72 +0.3 4,040,125 - ECD_03826 0.72 -0.6 4,040,125 - ECD_03826 0.72 +0.2 4,040,176 + ECD_03826 0.74 +2.2 4,040,176 + ECD_03826 0.74 +1.5 4,040,176 + ECD_03826 0.74 +0.2 4,040,177 - ECD_03826 0.74 -0.8 4,040,247 + ECD_03826 0.77 -0.3 4,040,248 - ECD_03826 0.77 +0.6 4,040,248 - ECD_03826 0.77 -1.2 4,040,248 - ECD_03826 0.77 +0.4 4,040,437 + ECD_03826 0.84 -0.0 4,040,437 + ECD_03826 0.84 -0.5 4,040,437 + ECD_03826 0.84 +0.4 4,040,459 + ECD_03826 0.85 -0.5 4,040,460 - ECD_03826 0.85 -0.1 4,040,460 - ECD_03826 0.85 -0.1 4,040,630 + -0.8 4,040,631 - +1.6 4,040,839 + +0.5 4,040,937 + +0.2 4,040,938 - +0.9 4,040,941 + +0.2 4,040,941 + -0.0 4,040,941 + +0.8 4,040,949 + +0.0 4,040,950 - +0.2 4,040,950 - -1.7 4,040,955 - +0.2 4,040,957 - +0.2 4,041,133 + +0.6 4,041,133 + -0.4 4,041,133 + -1.0 4,041,133 + +1.1 4,041,133 + -0.4 4,041,133 + -0.5 4,041,133 + -0.7 4,041,133 + +0.6 4,041,134 - -0.1 4,041,134 - -0.0 4,041,134 - +0.5 4,041,134 - +0.1 4,041,134 - -0.7 4,041,134 - -0.8 4,041,134 - +0.1 4,041,134 - -0.4 4,041,134 - -0.7 4,041,134 - +0.7 4,041,135 + +0.0 4,041,135 + +0.1 4,041,135 + +1.4 4,041,135 + +0.3 4,041,135 + +0.7 4,041,135 + +3.1 4,041,136 - +1.9 4,041,136 - +0.1 4,041,136 - -0.2 4,041,139 + -1.0 4,041,139 + -0.1 4,041,140 - -0.4 4,041,140 - -0.3 4,041,140 - -1.5 4,041,157 + +0.5 4,041,157 + +0.8 4,041,157 + -0.0 4,041,157 + +0.5 4,041,162 + +0.3 4,041,163 - -0.6 4,041,163 - -0.2 4,041,307 - ECD_03827 0.16 +0.8 4,041,307 - ECD_03827 0.16 +0.8 4,041,340 + ECD_03827 0.20 -0.5 4,041,340 + ECD_03827 0.20 -0.3 4,041,341 - ECD_03827 0.20 -0.4 4,041,341 - ECD_03827 0.20 +0.1 4,041,381 + ECD_03827 0.24 -0.6 4,041,384 + ECD_03827 0.25 -0.1 4,041,429 + ECD_03827 0.30 +1.2 4,041,429 + ECD_03827 0.30 +0.3 4,041,429 + ECD_03827 0.30 +0.3 4,041,429 + ECD_03827 0.30 +0.4 4,041,430 - ECD_03827 0.30 +0.1 4,041,430 - ECD_03827 0.30 -0.7 4,041,430 - ECD_03827 0.30 +0.1 4,041,492 + ECD_03827 0.37 -0.4 4,041,540 + ECD_03827 0.42 +0.5 4,041,553 + ECD_03827 0.44 -0.1 4,041,553 + ECD_03827 0.44 -2.0 4,041,578 + ECD_03827 0.47 +0.9 4,041,578 + ECD_03827 0.47 -0.1 4,041,807 + ECD_03827 0.72 +0.3 4,041,807 + ECD_03827 0.72 +0.5
Or see this region's nucleotide sequence