Strain Fitness in Escherichia coli BL21 around ECD_03826

Experiment: Bas58

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03825 and ECD_03826 are separated by 2 nucleotidesECD_03826 and ECD_03827 are separated by 348 nucleotides ECD_03825: ECD_03825 - cystathionine gamma-synthase, PLP-dependent, at 4,037,219 to 4,038,379 _03825 ECD_03826: ECD_03826 - Bifunctional aspartokinase/homoserine dehydrogenase 2, at 4,038,382 to 4,040,814 _03826 ECD_03827: ECD_03827 - 5,10-methylenetetrahydrofolate reductase, at 4,041,163 to 4,042,053 _03827 Position (kb) 4038 4039 4040 4041Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4037.527 kb on + strand, within ECD_03825at 4037.646 kb on + strand, within ECD_03825at 4037.647 kb on - strand, within ECD_03825at 4037.659 kb on + strand, within ECD_03825at 4037.738 kb on - strand, within ECD_03825at 4037.748 kb on + strand, within ECD_03825at 4037.761 kb on - strand, within ECD_03825at 4037.778 kb on + strand, within ECD_03825at 4037.778 kb on + strand, within ECD_03825at 4037.778 kb on + strand, within ECD_03825at 4037.779 kb on - strand, within ECD_03825at 4037.813 kb on + strand, within ECD_03825at 4037.814 kb on - strand, within ECD_03825at 4037.835 kb on + strand, within ECD_03825at 4037.835 kb on + strand, within ECD_03825at 4037.835 kb on + strand, within ECD_03825at 4037.836 kb on - strand, within ECD_03825at 4037.857 kb on + strand, within ECD_03825at 4037.858 kb on - strand, within ECD_03825at 4037.858 kb on - strand, within ECD_03825at 4037.933 kb on + strand, within ECD_03825at 4037.934 kb on - strand, within ECD_03825at 4037.934 kb on - strand, within ECD_03825at 4037.943 kb on + strand, within ECD_03825at 4037.943 kb on + strand, within ECD_03825at 4037.944 kb on - strand, within ECD_03825at 4038.012 kb on - strand, within ECD_03825at 4038.044 kb on + strand, within ECD_03825at 4038.044 kb on + strand, within ECD_03825at 4038.045 kb on - strand, within ECD_03825at 4038.045 kb on - strand, within ECD_03825at 4038.216 kb on + strand, within ECD_03825at 4038.301 kb on + strandat 4038.334 kb on - strandat 4038.494 kb on - strandat 4038.569 kb on + strandat 4038.729 kb on + strand, within ECD_03826at 4038.730 kb on - strand, within ECD_03826at 4038.800 kb on + strand, within ECD_03826at 4038.801 kb on - strand, within ECD_03826at 4038.804 kb on + strand, within ECD_03826at 4038.804 kb on + strand, within ECD_03826at 4038.805 kb on - strand, within ECD_03826at 4038.805 kb on - strand, within ECD_03826at 4038.960 kb on + strand, within ECD_03826at 4038.961 kb on - strand, within ECD_03826at 4038.961 kb on - strand, within ECD_03826at 4038.961 kb on - strand, within ECD_03826at 4039.085 kb on + strand, within ECD_03826at 4039.087 kb on + strand, within ECD_03826at 4039.087 kb on + strand, within ECD_03826at 4039.087 kb on + strand, within ECD_03826at 4039.088 kb on - strand, within ECD_03826at 4039.088 kb on - strand, within ECD_03826at 4039.194 kb on + strand, within ECD_03826at 4039.199 kb on + strand, within ECD_03826at 4039.200 kb on - strand, within ECD_03826at 4039.242 kb on + strand, within ECD_03826at 4039.242 kb on + strand, within ECD_03826at 4039.308 kb on + strand, within ECD_03826at 4039.309 kb on - strand, within ECD_03826at 4039.309 kb on - strand, within ECD_03826at 4039.440 kb on - strand, within ECD_03826at 4039.444 kb on - strand, within ECD_03826at 4039.523 kb on + strand, within ECD_03826at 4039.523 kb on + strand, within ECD_03826at 4039.648 kb on - strand, within ECD_03826at 4039.766 kb on + strand, within ECD_03826at 4039.843 kb on - strand, within ECD_03826at 4039.900 kb on + strand, within ECD_03826at 4039.901 kb on - strand, within ECD_03826at 4039.929 kb on - strand, within ECD_03826at 4039.999 kb on + strand, within ECD_03826at 4039.999 kb on + strand, within ECD_03826at 4040.009 kb on + strand, within ECD_03826at 4040.009 kb on + strand, within ECD_03826at 4040.053 kb on + strand, within ECD_03826at 4040.054 kb on - strand, within ECD_03826at 4040.054 kb on - strand, within ECD_03826at 4040.054 kb on - strand, within ECD_03826at 4040.086 kb on - strand, within ECD_03826at 4040.124 kb on + strand, within ECD_03826at 4040.124 kb on + strand, within ECD_03826at 4040.124 kb on + strand, within ECD_03826at 4040.125 kb on - strand, within ECD_03826at 4040.125 kb on - strand, within ECD_03826at 4040.125 kb on - strand, within ECD_03826at 4040.125 kb on - strand, within ECD_03826at 4040.176 kb on + strand, within ECD_03826at 4040.176 kb on + strand, within ECD_03826at 4040.176 kb on + strand, within ECD_03826at 4040.177 kb on - strand, within ECD_03826at 4040.247 kb on + strand, within ECD_03826at 4040.248 kb on - strand, within ECD_03826at 4040.248 kb on - strand, within ECD_03826at 4040.248 kb on - strand, within ECD_03826at 4040.437 kb on + strand, within ECD_03826at 4040.437 kb on + strand, within ECD_03826at 4040.437 kb on + strand, within ECD_03826at 4040.459 kb on + strand, within ECD_03826at 4040.460 kb on - strand, within ECD_03826at 4040.460 kb on - strand, within ECD_03826at 4040.630 kb on + strandat 4040.631 kb on - strandat 4040.839 kb on + strandat 4040.937 kb on + strandat 4040.938 kb on - strandat 4040.941 kb on + strandat 4040.941 kb on + strandat 4040.941 kb on + strandat 4040.949 kb on + strandat 4040.950 kb on - strandat 4040.950 kb on - strandat 4040.955 kb on - strandat 4040.957 kb on - strandat 4041.133 kb on + strandat 4041.133 kb on + strandat 4041.133 kb on + strandat 4041.133 kb on + strandat 4041.133 kb on + strandat 4041.133 kb on + strandat 4041.133 kb on + strandat 4041.133 kb on + strandat 4041.134 kb on - strandat 4041.134 kb on - strandat 4041.134 kb on - strandat 4041.134 kb on - strandat 4041.134 kb on - strandat 4041.134 kb on - strandat 4041.134 kb on - strandat 4041.134 kb on - strandat 4041.134 kb on - strandat 4041.134 kb on - strandat 4041.135 kb on + strandat 4041.135 kb on + strandat 4041.135 kb on + strandat 4041.135 kb on + strandat 4041.135 kb on + strandat 4041.135 kb on + strandat 4041.136 kb on - strandat 4041.136 kb on - strandat 4041.136 kb on - strandat 4041.139 kb on + strandat 4041.139 kb on + strandat 4041.140 kb on - strandat 4041.140 kb on - strandat 4041.140 kb on - strandat 4041.157 kb on + strandat 4041.157 kb on + strandat 4041.157 kb on + strandat 4041.157 kb on + strandat 4041.162 kb on + strandat 4041.163 kb on - strandat 4041.163 kb on - strandat 4041.307 kb on - strand, within ECD_03827at 4041.307 kb on - strand, within ECD_03827at 4041.340 kb on + strand, within ECD_03827at 4041.340 kb on + strand, within ECD_03827at 4041.341 kb on - strand, within ECD_03827at 4041.341 kb on - strand, within ECD_03827at 4041.381 kb on + strand, within ECD_03827at 4041.384 kb on + strand, within ECD_03827at 4041.429 kb on + strand, within ECD_03827at 4041.429 kb on + strand, within ECD_03827at 4041.429 kb on + strand, within ECD_03827at 4041.429 kb on + strand, within ECD_03827at 4041.430 kb on - strand, within ECD_03827at 4041.430 kb on - strand, within ECD_03827at 4041.430 kb on - strand, within ECD_03827at 4041.492 kb on + strand, within ECD_03827at 4041.540 kb on + strand, within ECD_03827at 4041.553 kb on + strand, within ECD_03827at 4041.553 kb on + strand, within ECD_03827at 4041.578 kb on + strand, within ECD_03827at 4041.578 kb on + strand, within ECD_03827at 4041.807 kb on + strand, within ECD_03827at 4041.807 kb on + strand, within ECD_03827

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas58
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4,037,527 + ECD_03825 0.27 +2.0
4,037,646 + ECD_03825 0.37 +1.0
4,037,647 - ECD_03825 0.37 +0.6
4,037,659 + ECD_03825 0.38 +0.1
4,037,738 - ECD_03825 0.45 +0.0
4,037,748 + ECD_03825 0.46 +0.6
4,037,761 - ECD_03825 0.47 +0.1
4,037,778 + ECD_03825 0.48 -0.0
4,037,778 + ECD_03825 0.48 +1.0
4,037,778 + ECD_03825 0.48 +0.2
4,037,779 - ECD_03825 0.48 -0.0
4,037,813 + ECD_03825 0.51 -0.4
4,037,814 - ECD_03825 0.51 +0.1
4,037,835 + ECD_03825 0.53 +0.3
4,037,835 + ECD_03825 0.53 +0.9
4,037,835 + ECD_03825 0.53 +0.4
4,037,836 - ECD_03825 0.53 -0.2
4,037,857 + ECD_03825 0.55 +0.9
4,037,858 - ECD_03825 0.55 +1.6
4,037,858 - ECD_03825 0.55 +0.0
4,037,933 + ECD_03825 0.61 +0.4
4,037,934 - ECD_03825 0.62 -0.6
4,037,934 - ECD_03825 0.62 +2.4
4,037,943 + ECD_03825 0.62 -0.8
4,037,943 + ECD_03825 0.62 -0.5
4,037,944 - ECD_03825 0.62 -0.2
4,038,012 - ECD_03825 0.68 +0.9
4,038,044 + ECD_03825 0.71 -0.0
4,038,044 + ECD_03825 0.71 +0.6
4,038,045 - ECD_03825 0.71 -1.7
4,038,045 - ECD_03825 0.71 +0.4
4,038,216 + ECD_03825 0.86 +0.5
4,038,301 + +0.3
4,038,334 - -0.2
4,038,494 - -0.6
4,038,569 + +0.1
4,038,729 + ECD_03826 0.14 -0.2
4,038,730 - ECD_03826 0.14 +0.4
4,038,800 + ECD_03826 0.17 -0.4
4,038,801 - ECD_03826 0.17 -0.4
4,038,804 + ECD_03826 0.17 +0.0
4,038,804 + ECD_03826 0.17 +0.2
4,038,805 - ECD_03826 0.17 -0.4
4,038,805 - ECD_03826 0.17 -0.4
4,038,960 + ECD_03826 0.24 -0.3
4,038,961 - ECD_03826 0.24 +0.3
4,038,961 - ECD_03826 0.24 +0.3
4,038,961 - ECD_03826 0.24 +1.3
4,039,085 + ECD_03826 0.29 -0.3
4,039,087 + ECD_03826 0.29 -0.3
4,039,087 + ECD_03826 0.29 +0.0
4,039,087 + ECD_03826 0.29 -2.3
4,039,088 - ECD_03826 0.29 +0.3
4,039,088 - ECD_03826 0.29 +1.7
4,039,194 + ECD_03826 0.33 +1.0
4,039,199 + ECD_03826 0.34 +0.0
4,039,200 - ECD_03826 0.34 -0.5
4,039,242 + ECD_03826 0.35 -0.8
4,039,242 + ECD_03826 0.35 -0.5
4,039,308 + ECD_03826 0.38 -0.7
4,039,309 - ECD_03826 0.38 +0.1
4,039,309 - ECD_03826 0.38 -1.5
4,039,440 - ECD_03826 0.43 -0.9
4,039,444 - ECD_03826 0.44 +0.2
4,039,523 + ECD_03826 0.47 -1.6
4,039,523 + ECD_03826 0.47 +0.5
4,039,648 - ECD_03826 0.52 -0.3
4,039,766 + ECD_03826 0.57 +0.0
4,039,843 - ECD_03826 0.60 +0.0
4,039,900 + ECD_03826 0.62 -0.2
4,039,901 - ECD_03826 0.62 -0.0
4,039,929 - ECD_03826 0.64 -0.7
4,039,999 + ECD_03826 0.66 +0.2
4,039,999 + ECD_03826 0.66 +0.1
4,040,009 + ECD_03826 0.67 -1.4
4,040,009 + ECD_03826 0.67 -0.9
4,040,053 + ECD_03826 0.69 -0.4
4,040,054 - ECD_03826 0.69 -1.2
4,040,054 - ECD_03826 0.69 -0.3
4,040,054 - ECD_03826 0.69 -1.1
4,040,086 - ECD_03826 0.70 -0.1
4,040,124 + ECD_03826 0.72 +0.1
4,040,124 + ECD_03826 0.72 +0.6
4,040,124 + ECD_03826 0.72 -0.5
4,040,125 - ECD_03826 0.72 +1.6
4,040,125 - ECD_03826 0.72 +0.3
4,040,125 - ECD_03826 0.72 -0.6
4,040,125 - ECD_03826 0.72 +0.2
4,040,176 + ECD_03826 0.74 +2.2
4,040,176 + ECD_03826 0.74 +1.5
4,040,176 + ECD_03826 0.74 +0.2
4,040,177 - ECD_03826 0.74 -0.8
4,040,247 + ECD_03826 0.77 -0.3
4,040,248 - ECD_03826 0.77 +0.6
4,040,248 - ECD_03826 0.77 -1.2
4,040,248 - ECD_03826 0.77 +0.4
4,040,437 + ECD_03826 0.84 -0.0
4,040,437 + ECD_03826 0.84 -0.5
4,040,437 + ECD_03826 0.84 +0.4
4,040,459 + ECD_03826 0.85 -0.5
4,040,460 - ECD_03826 0.85 -0.1
4,040,460 - ECD_03826 0.85 -0.1
4,040,630 + -0.8
4,040,631 - +1.6
4,040,839 + +0.5
4,040,937 + +0.2
4,040,938 - +0.9
4,040,941 + +0.2
4,040,941 + -0.0
4,040,941 + +0.8
4,040,949 + +0.0
4,040,950 - +0.2
4,040,950 - -1.7
4,040,955 - +0.2
4,040,957 - +0.2
4,041,133 + +0.6
4,041,133 + -0.4
4,041,133 + -1.0
4,041,133 + +1.1
4,041,133 + -0.4
4,041,133 + -0.5
4,041,133 + -0.7
4,041,133 + +0.6
4,041,134 - -0.1
4,041,134 - -0.0
4,041,134 - +0.5
4,041,134 - +0.1
4,041,134 - -0.7
4,041,134 - -0.8
4,041,134 - +0.1
4,041,134 - -0.4
4,041,134 - -0.7
4,041,134 - +0.7
4,041,135 + +0.0
4,041,135 + +0.1
4,041,135 + +1.4
4,041,135 + +0.3
4,041,135 + +0.7
4,041,135 + +3.1
4,041,136 - +1.9
4,041,136 - +0.1
4,041,136 - -0.2
4,041,139 + -1.0
4,041,139 + -0.1
4,041,140 - -0.4
4,041,140 - -0.3
4,041,140 - -1.5
4,041,157 + +0.5
4,041,157 + +0.8
4,041,157 + -0.0
4,041,157 + +0.5
4,041,162 + +0.3
4,041,163 - -0.6
4,041,163 - -0.2
4,041,307 - ECD_03827 0.16 +0.8
4,041,307 - ECD_03827 0.16 +0.8
4,041,340 + ECD_03827 0.20 -0.5
4,041,340 + ECD_03827 0.20 -0.3
4,041,341 - ECD_03827 0.20 -0.4
4,041,341 - ECD_03827 0.20 +0.1
4,041,381 + ECD_03827 0.24 -0.6
4,041,384 + ECD_03827 0.25 -0.1
4,041,429 + ECD_03827 0.30 +1.2
4,041,429 + ECD_03827 0.30 +0.3
4,041,429 + ECD_03827 0.30 +0.3
4,041,429 + ECD_03827 0.30 +0.4
4,041,430 - ECD_03827 0.30 +0.1
4,041,430 - ECD_03827 0.30 -0.7
4,041,430 - ECD_03827 0.30 +0.1
4,041,492 + ECD_03827 0.37 -0.4
4,041,540 + ECD_03827 0.42 +0.5
4,041,553 + ECD_03827 0.44 -0.1
4,041,553 + ECD_03827 0.44 -2.0
4,041,578 + ECD_03827 0.47 +0.9
4,041,578 + ECD_03827 0.47 -0.1
4,041,807 + ECD_03827 0.72 +0.3
4,041,807 + ECD_03827 0.72 +0.5

Or see this region's nucleotide sequence