Experiment: Bas58
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03320 and ECD_03321 are separated by 72 nucleotides ECD_03321 and ECD_03322 are separated by 3 nucleotides ECD_03322 and ECD_03323 are separated by 131 nucleotides
ECD_03320: ECD_03320 - DUF165 family inner membrane protein, at 3,471,601 to 3,472,266
_03320
ECD_03321: ECD_03321 - putative lipoprotein, at 3,472,339 to 3,472,896
_03321
ECD_03322: ECD_03322 - putative arabinose efflux transporter, at 3,472,900 to 3,474,117
_03322
ECD_03323: ECD_03323 - UPF0118 family putative transporter, at 3,474,249 to 3,475,298
_03323
Position (kb)
3472
3473
3474
3475 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 3471.955 kb on + strand, within ECD_03320 at 3472.110 kb on + strand, within ECD_03320 at 3472.192 kb on + strand, within ECD_03320 at 3472.193 kb on - strand, within ECD_03320 at 3472.209 kb on + strand at 3472.209 kb on + strand at 3472.210 kb on - strand at 3472.289 kb on + strand at 3472.353 kb on + strand at 3472.358 kb on - strand at 3472.358 kb on - strand at 3472.447 kb on - strand, within ECD_03321 at 3472.509 kb on + strand, within ECD_03321 at 3472.548 kb on + strand, within ECD_03321 at 3472.549 kb on - strand, within ECD_03321 at 3472.695 kb on + strand, within ECD_03321 at 3472.740 kb on + strand, within ECD_03321 at 3472.740 kb on + strand, within ECD_03321 at 3472.740 kb on + strand, within ECD_03321 at 3472.740 kb on + strand, within ECD_03321 at 3472.741 kb on - strand, within ECD_03321 at 3472.741 kb on - strand, within ECD_03321 at 3472.741 kb on - strand, within ECD_03321 at 3472.743 kb on + strand, within ECD_03321 at 3472.743 kb on + strand, within ECD_03321 at 3472.744 kb on - strand, within ECD_03321 at 3472.768 kb on + strand, within ECD_03321 at 3472.768 kb on + strand, within ECD_03321 at 3472.875 kb on + strand at 3472.875 kb on + strand at 3472.875 kb on + strand at 3472.875 kb on + strand at 3472.878 kb on + strand at 3472.963 kb on + strand at 3472.964 kb on - strand at 3473.001 kb on - strand at 3473.074 kb on - strand, within ECD_03322 at 3473.077 kb on + strand, within ECD_03322 at 3473.084 kb on + strand, within ECD_03322 at 3473.084 kb on + strand, within ECD_03322 at 3473.084 kb on + strand, within ECD_03322 at 3473.085 kb on - strand, within ECD_03322 at 3473.085 kb on - strand, within ECD_03322 at 3473.085 kb on - strand, within ECD_03322 at 3473.182 kb on + strand, within ECD_03322 at 3473.243 kb on - strand, within ECD_03322 at 3473.309 kb on - strand, within ECD_03322 at 3473.337 kb on + strand, within ECD_03322 at 3473.338 kb on - strand, within ECD_03322 at 3473.338 kb on - strand, within ECD_03322 at 3473.338 kb on - strand, within ECD_03322 at 3473.338 kb on - strand, within ECD_03322 at 3473.377 kb on - strand, within ECD_03322 at 3473.384 kb on + strand, within ECD_03322 at 3473.451 kb on - strand, within ECD_03322 at 3473.597 kb on + strand, within ECD_03322 at 3473.597 kb on + strand, within ECD_03322 at 3473.640 kb on - strand, within ECD_03322 at 3473.640 kb on - strand, within ECD_03322 at 3473.770 kb on + strand, within ECD_03322 at 3473.773 kb on + strand, within ECD_03322 at 3473.848 kb on + strand, within ECD_03322 at 3473.849 kb on - strand, within ECD_03322 at 3473.990 kb on + strand, within ECD_03322 at 3473.991 kb on - strand, within ECD_03322 at 3473.991 kb on - strand, within ECD_03322 at 3473.991 kb on - strand, within ECD_03322 at 3474.029 kb on + strand at 3474.043 kb on - strand at 3474.052 kb on + strand at 3474.053 kb on - strand at 3474.054 kb on + strand at 3474.054 kb on + strand at 3474.055 kb on - strand at 3474.089 kb on - strand at 3474.182 kb on + strand at 3474.221 kb on + strand at 3474.222 kb on - strand at 3474.345 kb on - strand at 3474.361 kb on + strand, within ECD_03323 at 3474.443 kb on + strand, within ECD_03323 at 3474.443 kb on + strand, within ECD_03323 at 3474.443 kb on + strand, within ECD_03323 at 3474.444 kb on - strand, within ECD_03323 at 3474.451 kb on + strand, within ECD_03323 at 3474.524 kb on + strand, within ECD_03323 at 3474.525 kb on - strand, within ECD_03323 at 3474.603 kb on - strand, within ECD_03323 at 3474.650 kb on + strand, within ECD_03323 at 3474.722 kb on - strand, within ECD_03323 at 3474.729 kb on - strand, within ECD_03323 at 3474.779 kb on + strand, within ECD_03323 at 3474.805 kb on + strand, within ECD_03323 at 3474.805 kb on + strand, within ECD_03323 at 3474.818 kb on + strand, within ECD_03323 at 3474.818 kb on + strand, within ECD_03323 at 3474.819 kb on - strand, within ECD_03323 at 3474.931 kb on + strand, within ECD_03323 at 3474.951 kb on + strand, within ECD_03323 at 3474.951 kb on + strand, within ECD_03323 at 3474.951 kb on + strand, within ECD_03323 at 3474.952 kb on - strand, within ECD_03323 at 3474.952 kb on - strand, within ECD_03323 at 3475.031 kb on + strand, within ECD_03323 at 3475.031 kb on + strand, within ECD_03323 at 3475.031 kb on + strand, within ECD_03323 at 3475.031 kb on + strand, within ECD_03323 at 3475.031 kb on + strand, within ECD_03323 at 3475.054 kb on + strand, within ECD_03323 at 3475.085 kb on - strand, within ECD_03323
Per-strain Table
Position Strand Gene LocusTag Fraction Bas58 remove 3,471,955 + ECD_03320 0.53 +0.3 3,472,110 + ECD_03320 0.76 -0.0 3,472,192 + ECD_03320 0.89 +1.3 3,472,193 - ECD_03320 0.89 -0.3 3,472,209 + +1.0 3,472,209 + -0.4 3,472,210 - +1.7 3,472,289 + +1.3 3,472,353 + -0.3 3,472,358 - +0.1 3,472,358 - +0.1 3,472,447 - ECD_03321 0.19 -0.1 3,472,509 + ECD_03321 0.30 -0.1 3,472,548 + ECD_03321 0.37 -0.2 3,472,549 - ECD_03321 0.38 -0.3 3,472,695 + ECD_03321 0.64 -0.8 3,472,740 + ECD_03321 0.72 +0.5 3,472,740 + ECD_03321 0.72 -0.5 3,472,740 + ECD_03321 0.72 +0.1 3,472,740 + ECD_03321 0.72 +0.0 3,472,741 - ECD_03321 0.72 +0.5 3,472,741 - ECD_03321 0.72 -0.1 3,472,741 - ECD_03321 0.72 +0.4 3,472,743 + ECD_03321 0.72 -1.1 3,472,743 + ECD_03321 0.72 +0.3 3,472,744 - ECD_03321 0.73 +0.3 3,472,768 + ECD_03321 0.77 +0.5 3,472,768 + ECD_03321 0.77 -1.1 3,472,875 + +0.3 3,472,875 + -1.8 3,472,875 + +0.8 3,472,875 + +0.3 3,472,878 + -0.2 3,472,963 + -1.1 3,472,964 - +1.2 3,473,001 - +4.2 3,473,074 - ECD_03322 0.14 -0.8 3,473,077 + ECD_03322 0.15 +0.5 3,473,084 + ECD_03322 0.15 -1.5 3,473,084 + ECD_03322 0.15 +0.7 3,473,084 + ECD_03322 0.15 +0.2 3,473,085 - ECD_03322 0.15 -0.7 3,473,085 - ECD_03322 0.15 +0.1 3,473,085 - ECD_03322 0.15 +0.5 3,473,182 + ECD_03322 0.23 -0.8 3,473,243 - ECD_03322 0.28 +0.5 3,473,309 - ECD_03322 0.34 -0.2 3,473,337 + ECD_03322 0.36 +1.1 3,473,338 - ECD_03322 0.36 -0.2 3,473,338 - ECD_03322 0.36 +0.0 3,473,338 - ECD_03322 0.36 +0.8 3,473,338 - ECD_03322 0.36 +0.7 3,473,377 - ECD_03322 0.39 -0.4 3,473,384 + ECD_03322 0.40 -0.5 3,473,451 - ECD_03322 0.45 +0.4 3,473,597 + ECD_03322 0.57 +0.0 3,473,597 + ECD_03322 0.57 -0.2 3,473,640 - ECD_03322 0.61 -1.0 3,473,640 - ECD_03322 0.61 -0.0 3,473,770 + ECD_03322 0.71 -1.0 3,473,773 + ECD_03322 0.72 -0.7 3,473,848 + ECD_03322 0.78 -1.7 3,473,849 - ECD_03322 0.78 +0.0 3,473,990 + ECD_03322 0.89 -1.9 3,473,991 - ECD_03322 0.90 +0.0 3,473,991 - ECD_03322 0.90 +0.5 3,473,991 - ECD_03322 0.90 -0.1 3,474,029 + -1.1 3,474,043 - +0.8 3,474,052 + +0.3 3,474,053 - +0.2 3,474,054 + +0.1 3,474,054 + +0.4 3,474,055 - +0.4 3,474,089 - -1.0 3,474,182 + -0.4 3,474,221 + -0.4 3,474,222 - -0.3 3,474,345 - +0.7 3,474,361 + ECD_03323 0.11 +0.2 3,474,443 + ECD_03323 0.18 +0.0 3,474,443 + ECD_03323 0.18 +1.4 3,474,443 + ECD_03323 0.18 +0.8 3,474,444 - ECD_03323 0.19 -0.1 3,474,451 + ECD_03323 0.19 -1.6 3,474,524 + ECD_03323 0.26 -0.3 3,474,525 - ECD_03323 0.26 +0.3 3,474,603 - ECD_03323 0.34 +1.3 3,474,650 + ECD_03323 0.38 -0.2 3,474,722 - ECD_03323 0.45 -0.0 3,474,729 - ECD_03323 0.46 +0.1 3,474,779 + ECD_03323 0.50 -0.1 3,474,805 + ECD_03323 0.53 +0.2 3,474,805 + ECD_03323 0.53 +0.7 3,474,818 + ECD_03323 0.54 +0.9 3,474,818 + ECD_03323 0.54 -0.9 3,474,819 - ECD_03323 0.54 +0.9 3,474,931 + ECD_03323 0.65 +1.2 3,474,951 + ECD_03323 0.67 +0.4 3,474,951 + ECD_03323 0.67 +0.7 3,474,951 + ECD_03323 0.67 -0.5 3,474,952 - ECD_03323 0.67 +1.0 3,474,952 - ECD_03323 0.67 +0.1 3,475,031 + ECD_03323 0.74 -0.0 3,475,031 + ECD_03323 0.74 +1.0 3,475,031 + ECD_03323 0.74 -0.1 3,475,031 + ECD_03323 0.74 +0.0 3,475,031 + ECD_03323 0.74 +0.1 3,475,054 + ECD_03323 0.77 +0.2 3,475,085 - ECD_03323 0.80 +0.5
Or see this region's nucleotide sequence