Strain Fitness in Escherichia coli BL21 around ECD_03215

Experiment: Bas58

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03213 and ECD_03214 are separated by 104 nucleotidesECD_03214 and ECD_03215 are separated by 270 nucleotidesECD_03215 and ECD_03216 are separated by 261 nucleotides ECD_03213: ECD_03213 - putative antitoxin for Fic, at 3,351,054 to 3,351,221 _03213 ECD_03214: ECD_03214 - peptidyl-prolyl cis-trans isomerase A (rotamase A), at 3,351,326 to 3,351,898 _03214 ECD_03215: ECD_03215 - putative transporter, at 3,352,169 to 3,353,350 _03215 ECD_03216: ECD_03216 - nitrite reductase, large subunit, NAD(P)H-binding, at 3,353,612 to 3,356,155 _03216 Position (kb) 3352 3353 3354Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3351.257 kb on + strandat 3351.257 kb on + strandat 3351.257 kb on + strandat 3351.258 kb on - strandat 3351.258 kb on - strandat 3351.258 kb on - strandat 3351.258 kb on - strandat 3351.260 kb on - strandat 3351.327 kb on + strandat 3351.381 kb on + strandat 3351.667 kb on + strand, within ECD_03214at 3351.695 kb on - strand, within ECD_03214at 3351.703 kb on + strand, within ECD_03214at 3351.704 kb on - strand, within ECD_03214at 3351.706 kb on - strand, within ECD_03214at 3351.723 kb on + strand, within ECD_03214at 3351.724 kb on - strand, within ECD_03214at 3351.724 kb on - strand, within ECD_03214at 3351.806 kb on + strand, within ECD_03214at 3351.806 kb on + strand, within ECD_03214at 3352.001 kb on + strandat 3352.003 kb on + strandat 3352.003 kb on + strandat 3352.003 kb on + strandat 3352.007 kb on + strandat 3352.051 kb on - strandat 3352.088 kb on - strandat 3352.175 kb on - strandat 3352.267 kb on + strandat 3352.306 kb on + strand, within ECD_03215at 3352.339 kb on - strand, within ECD_03215at 3352.345 kb on + strand, within ECD_03215at 3352.505 kb on - strand, within ECD_03215at 3352.507 kb on + strand, within ECD_03215at 3352.507 kb on + strand, within ECD_03215at 3352.507 kb on + strand, within ECD_03215at 3352.507 kb on + strand, within ECD_03215at 3352.508 kb on - strand, within ECD_03215at 3352.508 kb on - strand, within ECD_03215at 3352.508 kb on - strand, within ECD_03215at 3352.508 kb on - strand, within ECD_03215at 3352.508 kb on - strand, within ECD_03215at 3352.508 kb on - strand, within ECD_03215at 3352.519 kb on + strand, within ECD_03215at 3352.519 kb on + strand, within ECD_03215at 3352.519 kb on + strand, within ECD_03215at 3352.520 kb on - strand, within ECD_03215at 3352.520 kb on - strand, within ECD_03215at 3352.541 kb on + strand, within ECD_03215at 3352.541 kb on + strand, within ECD_03215at 3352.541 kb on + strand, within ECD_03215at 3352.542 kb on - strand, within ECD_03215at 3352.542 kb on - strand, within ECD_03215at 3352.572 kb on + strand, within ECD_03215at 3352.572 kb on + strand, within ECD_03215at 3352.577 kb on - strand, within ECD_03215at 3352.577 kb on - strand, within ECD_03215at 3352.595 kb on - strand, within ECD_03215at 3352.665 kb on - strand, within ECD_03215at 3352.685 kb on + strand, within ECD_03215at 3352.685 kb on + strand, within ECD_03215at 3352.685 kb on + strand, within ECD_03215at 3352.686 kb on - strand, within ECD_03215at 3352.686 kb on - strand, within ECD_03215at 3352.693 kb on + strand, within ECD_03215at 3352.820 kb on + strand, within ECD_03215at 3352.821 kb on - strand, within ECD_03215at 3352.821 kb on - strand, within ECD_03215at 3352.821 kb on - strand, within ECD_03215at 3352.821 kb on - strand, within ECD_03215at 3352.821 kb on - strand, within ECD_03215at 3352.928 kb on + strand, within ECD_03215at 3352.928 kb on + strand, within ECD_03215at 3352.928 kb on + strand, within ECD_03215at 3352.928 kb on + strand, within ECD_03215at 3352.928 kb on + strand, within ECD_03215at 3352.928 kb on + strand, within ECD_03215at 3352.928 kb on + strand, within ECD_03215at 3352.928 kb on + strand, within ECD_03215at 3352.928 kb on + strand, within ECD_03215at 3352.929 kb on - strand, within ECD_03215at 3353.024 kb on + strand, within ECD_03215at 3353.024 kb on + strand, within ECD_03215at 3353.025 kb on - strand, within ECD_03215at 3353.053 kb on + strand, within ECD_03215at 3353.053 kb on + strand, within ECD_03215at 3353.053 kb on + strand, within ECD_03215at 3353.053 kb on + strand, within ECD_03215at 3353.053 kb on + strand, within ECD_03215at 3353.054 kb on - strand, within ECD_03215at 3353.054 kb on - strand, within ECD_03215at 3353.099 kb on + strand, within ECD_03215at 3353.099 kb on + strand, within ECD_03215at 3353.099 kb on + strand, within ECD_03215at 3353.100 kb on - strand, within ECD_03215at 3353.100 kb on - strand, within ECD_03215at 3353.101 kb on + strand, within ECD_03215at 3353.139 kb on + strand, within ECD_03215at 3353.139 kb on + strand, within ECD_03215at 3353.158 kb on + strand, within ECD_03215at 3353.188 kb on + strand, within ECD_03215at 3353.191 kb on + strand, within ECD_03215at 3353.191 kb on + strand, within ECD_03215at 3353.191 kb on + strand, within ECD_03215at 3353.191 kb on + strand, within ECD_03215at 3353.191 kb on + strand, within ECD_03215at 3353.192 kb on - strand, within ECD_03215at 3353.192 kb on - strand, within ECD_03215at 3353.192 kb on - strand, within ECD_03215at 3353.192 kb on - strand, within ECD_03215at 3353.192 kb on - strand, within ECD_03215at 3353.231 kb on - strand, within ECD_03215at 3353.231 kb on - strand, within ECD_03215at 3353.231 kb on - strand, within ECD_03215at 3353.255 kb on - strandat 3353.255 kb on - strandat 3353.270 kb on + strandat 3353.271 kb on - strandat 3353.330 kb on - strandat 3353.349 kb on - strandat 3353.355 kb on + strandat 3353.415 kb on + strandat 3353.416 kb on - strandat 3353.416 kb on - strandat 3353.494 kb on + strandat 3353.587 kb on + strandat 3353.591 kb on - strandat 3353.708 kb on - strandat 3353.710 kb on + strandat 3353.742 kb on - strandat 3353.751 kb on + strandat 3353.752 kb on - strandat 3353.765 kb on + strandat 3353.765 kb on + strandat 3354.004 kb on + strand, within ECD_03216at 3354.004 kb on + strand, within ECD_03216at 3354.005 kb on - strand, within ECD_03216at 3354.115 kb on + strand, within ECD_03216at 3354.209 kb on - strand, within ECD_03216at 3354.209 kb on - strand, within ECD_03216at 3354.209 kb on - strand, within ECD_03216

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas58
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3,351,257 + +0.2
3,351,257 + +0.5
3,351,257 + +0.8
3,351,258 - -0.2
3,351,258 - +0.6
3,351,258 - +1.2
3,351,258 - -0.3
3,351,260 - -0.1
3,351,327 + -1.6
3,351,381 + +0.7
3,351,667 + ECD_03214 0.60 +0.4
3,351,695 - ECD_03214 0.64 +0.1
3,351,703 + ECD_03214 0.66 +0.5
3,351,704 - ECD_03214 0.66 -0.4
3,351,706 - ECD_03214 0.66 +0.4
3,351,723 + ECD_03214 0.69 +0.0
3,351,724 - ECD_03214 0.69 -0.1
3,351,724 - ECD_03214 0.69 -0.2
3,351,806 + ECD_03214 0.84 +0.3
3,351,806 + ECD_03214 0.84 -0.0
3,352,001 + -0.3
3,352,003 + -0.7
3,352,003 + +0.8
3,352,003 + +0.9
3,352,007 + -0.3
3,352,051 - +0.8
3,352,088 - +0.5
3,352,175 - +0.5
3,352,267 + +1.4
3,352,306 + ECD_03215 0.12 -0.4
3,352,339 - ECD_03215 0.14 +0.4
3,352,345 + ECD_03215 0.15 +0.8
3,352,505 - ECD_03215 0.28 -0.1
3,352,507 + ECD_03215 0.29 +0.4
3,352,507 + ECD_03215 0.29 +0.1
3,352,507 + ECD_03215 0.29 -0.5
3,352,507 + ECD_03215 0.29 +1.5
3,352,508 - ECD_03215 0.29 +1.2
3,352,508 - ECD_03215 0.29 +0.6
3,352,508 - ECD_03215 0.29 -0.2
3,352,508 - ECD_03215 0.29 +1.0
3,352,508 - ECD_03215 0.29 +0.4
3,352,508 - ECD_03215 0.29 +0.7
3,352,519 + ECD_03215 0.30 +0.5
3,352,519 + ECD_03215 0.30 +0.3
3,352,519 + ECD_03215 0.30 +0.3
3,352,520 - ECD_03215 0.30 +0.0
3,352,520 - ECD_03215 0.30 +0.8
3,352,541 + ECD_03215 0.31 -0.4
3,352,541 + ECD_03215 0.31 -1.6
3,352,541 + ECD_03215 0.31 +3.7
3,352,542 - ECD_03215 0.32 +0.4
3,352,542 - ECD_03215 0.32 +1.0
3,352,572 + ECD_03215 0.34 +0.0
3,352,572 + ECD_03215 0.34 +0.8
3,352,577 - ECD_03215 0.35 +1.5
3,352,577 - ECD_03215 0.35 -0.3
3,352,595 - ECD_03215 0.36 -0.6
3,352,665 - ECD_03215 0.42 +1.2
3,352,685 + ECD_03215 0.44 +0.3
3,352,685 + ECD_03215 0.44 +0.3
3,352,685 + ECD_03215 0.44 +0.5
3,352,686 - ECD_03215 0.44 +0.1
3,352,686 - ECD_03215 0.44 +0.1
3,352,693 + ECD_03215 0.44 +0.1
3,352,820 + ECD_03215 0.55 +0.4
3,352,821 - ECD_03215 0.55 +1.5
3,352,821 - ECD_03215 0.55 +0.7
3,352,821 - ECD_03215 0.55 +0.4
3,352,821 - ECD_03215 0.55 +0.8
3,352,821 - ECD_03215 0.55 -0.3
3,352,928 + ECD_03215 0.64 +0.9
3,352,928 + ECD_03215 0.64 +0.3
3,352,928 + ECD_03215 0.64 +0.8
3,352,928 + ECD_03215 0.64 +0.0
3,352,928 + ECD_03215 0.64 +0.6
3,352,928 + ECD_03215 0.64 -0.2
3,352,928 + ECD_03215 0.64 +1.6
3,352,928 + ECD_03215 0.64 +2.6
3,352,928 + ECD_03215 0.64 +0.8
3,352,929 - ECD_03215 0.64 +0.1
3,353,024 + ECD_03215 0.72 +1.1
3,353,024 + ECD_03215 0.72 +1.7
3,353,025 - ECD_03215 0.72 -1.9
3,353,053 + ECD_03215 0.75 +0.1
3,353,053 + ECD_03215 0.75 +0.3
3,353,053 + ECD_03215 0.75 +0.3
3,353,053 + ECD_03215 0.75 +0.1
3,353,053 + ECD_03215 0.75 +0.5
3,353,054 - ECD_03215 0.75 +0.7
3,353,054 - ECD_03215 0.75 +0.0
3,353,099 + ECD_03215 0.79 +3.4
3,353,099 + ECD_03215 0.79 +0.3
3,353,099 + ECD_03215 0.79 +0.9
3,353,100 - ECD_03215 0.79 +0.1
3,353,100 - ECD_03215 0.79 +0.2
3,353,101 + ECD_03215 0.79 -0.9
3,353,139 + ECD_03215 0.82 +0.9
3,353,139 + ECD_03215 0.82 +0.1
3,353,158 + ECD_03215 0.84 +0.3
3,353,188 + ECD_03215 0.86 -0.3
3,353,191 + ECD_03215 0.86 +0.8
3,353,191 + ECD_03215 0.86 +1.2
3,353,191 + ECD_03215 0.86 +1.0
3,353,191 + ECD_03215 0.86 -0.7
3,353,191 + ECD_03215 0.86 +0.3
3,353,192 - ECD_03215 0.87 +0.7
3,353,192 - ECD_03215 0.87 +1.2
3,353,192 - ECD_03215 0.87 -0.8
3,353,192 - ECD_03215 0.87 +0.5
3,353,192 - ECD_03215 0.87 +0.6
3,353,231 - ECD_03215 0.90 +0.5
3,353,231 - ECD_03215 0.90 +1.1
3,353,231 - ECD_03215 0.90 +0.8
3,353,255 - +0.3
3,353,255 - -0.1
3,353,270 + +0.6
3,353,271 - +0.4
3,353,330 - +0.2
3,353,349 - -0.1
3,353,355 + +0.2
3,353,415 + -0.1
3,353,416 - +1.4
3,353,416 - -0.4
3,353,494 + -1.6
3,353,587 + +0.8
3,353,591 - -0.9
3,353,708 - +0.0
3,353,710 + -1.6
3,353,742 - +0.5
3,353,751 + -2.2
3,353,752 - +0.0
3,353,765 + +0.4
3,353,765 + +3.6
3,354,004 + ECD_03216 0.15 +0.7
3,354,004 + ECD_03216 0.15 -3.1
3,354,005 - ECD_03216 0.15 -1.0
3,354,115 + ECD_03216 0.20 +0.4
3,354,209 - ECD_03216 0.23 +0.4
3,354,209 - ECD_03216 0.23 -0.1
3,354,209 - ECD_03216 0.23 -1.2

Or see this region's nucleotide sequence