Strain Fitness in Escherichia coli BL21 around ECD_03106

Experiment: Bas58

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03105 and ECD_03106 are separated by 67 nucleotidesECD_03106 and ECD_03107 overlap by 11 nucleotidesECD_03107 and ECD_03108 are separated by 8 nucleotides ECD_03105: ECD_03105 - DUF3971-AsmA2 domains protein, at 3,253,614 to 3,257,414 _03105 ECD_03106: ECD_03106 - ribonuclease G, at 3,257,482 to 3,258,951 _03106 ECD_03107: ECD_03107 - dTTP/UTP pyrophosphatase; m(5)UTP/m(5)CTP/pseudo-UTP pyrophosphatase, at 3,258,941 to 3,259,534 _03107 ECD_03108: ECD_03108 - cell wall structural complex MreBCD transmembrane component MreD, at 3,259,543 to 3,260,031 _03108 Position (kb) 3257 3258 3259Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3256.551 kb on - strand, within ECD_03105at 3256.554 kb on - strand, within ECD_03105at 3256.584 kb on - strand, within ECD_03105at 3256.584 kb on - strand, within ECD_03105at 3256.648 kb on - strand, within ECD_03105at 3256.648 kb on - strand, within ECD_03105at 3256.861 kb on - strand, within ECD_03105at 3257.114 kb on + strandat 3257.115 kb on - strandat 3257.118 kb on + strandat 3257.118 kb on + strandat 3257.119 kb on - strandat 3257.119 kb on - strandat 3257.119 kb on - strandat 3257.119 kb on - strandat 3257.184 kb on + strandat 3257.283 kb on + strandat 3257.333 kb on + strandat 3257.484 kb on - strandat 3257.484 kb on - strandat 3257.484 kb on - strandat 3257.492 kb on - strandat 3257.516 kb on + strandat 3257.517 kb on - strandat 3257.517 kb on - strandat 3257.624 kb on + strandat 3257.625 kb on - strandat 3257.625 kb on - strandat 3257.649 kb on - strand, within ECD_03106at 3257.688 kb on - strand, within ECD_03106at 3257.688 kb on - strand, within ECD_03106at 3257.688 kb on - strand, within ECD_03106at 3257.692 kb on + strand, within ECD_03106at 3257.752 kb on + strand, within ECD_03106at 3257.752 kb on + strand, within ECD_03106at 3257.752 kb on + strand, within ECD_03106at 3257.752 kb on + strand, within ECD_03106at 3257.753 kb on - strand, within ECD_03106at 3257.753 kb on - strand, within ECD_03106at 3257.753 kb on - strand, within ECD_03106at 3257.753 kb on - strand, within ECD_03106at 3257.753 kb on - strand, within ECD_03106at 3257.753 kb on - strand, within ECD_03106at 3257.896 kb on - strand, within ECD_03106at 3257.937 kb on + strand, within ECD_03106at 3258.100 kb on + strand, within ECD_03106at 3258.227 kb on - strand, within ECD_03106at 3258.237 kb on - strand, within ECD_03106at 3258.237 kb on - strand, within ECD_03106at 3258.364 kb on - strand, within ECD_03106at 3258.519 kb on + strand, within ECD_03106at 3258.806 kb on - strandat 3258.828 kb on - strandat 3258.828 kb on - strandat 3258.831 kb on + strandat 3258.898 kb on - strandat 3258.899 kb on + strandat 3258.926 kb on - strandat 3258.986 kb on - strandat 3258.986 kb on - strandat 3258.990 kb on - strandat 3258.992 kb on + strandat 3259.046 kb on + strand, within ECD_03107at 3259.086 kb on + strand, within ECD_03107at 3259.099 kb on + strand, within ECD_03107at 3259.100 kb on - strand, within ECD_03107at 3259.125 kb on + strand, within ECD_03107at 3259.148 kb on + strand, within ECD_03107at 3259.149 kb on - strand, within ECD_03107at 3259.321 kb on + strand, within ECD_03107at 3259.321 kb on + strand, within ECD_03107at 3259.405 kb on - strand, within ECD_03107at 3259.405 kb on - strand, within ECD_03107at 3259.405 kb on - strand, within ECD_03107at 3259.456 kb on + strand, within ECD_03107at 3259.518 kb on - strandat 3259.535 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas58
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3,256,551 - ECD_03105 0.77 -1.0
3,256,554 - ECD_03105 0.77 -0.1
3,256,584 - ECD_03105 0.78 +1.1
3,256,584 - ECD_03105 0.78 -0.1
3,256,648 - ECD_03105 0.80 +0.2
3,256,648 - ECD_03105 0.80 -0.0
3,256,861 - ECD_03105 0.85 +0.0
3,257,114 + -0.3
3,257,115 - +0.2
3,257,118 + -1.4
3,257,118 + +0.9
3,257,119 - -0.7
3,257,119 - +0.5
3,257,119 - +0.2
3,257,119 - +0.3
3,257,184 + -1.8
3,257,283 + +0.2
3,257,333 + -0.6
3,257,484 - +0.3
3,257,484 - +1.4
3,257,484 - -1.0
3,257,492 - +0.2
3,257,516 + -0.7
3,257,517 - -1.0
3,257,517 - -0.9
3,257,624 + -0.2
3,257,625 - -0.0
3,257,625 - -1.3
3,257,649 - ECD_03106 0.11 -0.2
3,257,688 - ECD_03106 0.14 -0.3
3,257,688 - ECD_03106 0.14 +0.4
3,257,688 - ECD_03106 0.14 +0.0
3,257,692 + ECD_03106 0.14 +1.1
3,257,752 + ECD_03106 0.18 -0.2
3,257,752 + ECD_03106 0.18 +1.5
3,257,752 + ECD_03106 0.18 -0.2
3,257,752 + ECD_03106 0.18 +1.5
3,257,753 - ECD_03106 0.18 +0.9
3,257,753 - ECD_03106 0.18 +0.9
3,257,753 - ECD_03106 0.18 +0.7
3,257,753 - ECD_03106 0.18 -1.3
3,257,753 - ECD_03106 0.18 -0.6
3,257,753 - ECD_03106 0.18 +0.5
3,257,896 - ECD_03106 0.28 +1.3
3,257,937 + ECD_03106 0.31 +3.0
3,258,100 + ECD_03106 0.42 +0.3
3,258,227 - ECD_03106 0.51 +1.9
3,258,237 - ECD_03106 0.51 +1.7
3,258,237 - ECD_03106 0.51 +1.1
3,258,364 - ECD_03106 0.60 +1.0
3,258,519 + ECD_03106 0.71 +1.3
3,258,806 - +0.5
3,258,828 - +0.0
3,258,828 - +0.7
3,258,831 + +0.9
3,258,898 - +1.1
3,258,899 + +0.8
3,258,926 - +1.1
3,258,986 - -2.3
3,258,986 - +0.2
3,258,990 - -0.3
3,258,992 + +0.0
3,259,046 + ECD_03107 0.18 +1.4
3,259,086 + ECD_03107 0.24 +0.7
3,259,099 + ECD_03107 0.27 -1.4
3,259,100 - ECD_03107 0.27 +0.8
3,259,125 + ECD_03107 0.31 +0.6
3,259,148 + ECD_03107 0.35 +1.9
3,259,149 - ECD_03107 0.35 +1.0
3,259,321 + ECD_03107 0.64 +0.0
3,259,321 + ECD_03107 0.64 +0.9
3,259,405 - ECD_03107 0.78 +0.9
3,259,405 - ECD_03107 0.78 +0.0
3,259,405 - ECD_03107 0.78 +0.5
3,259,456 + ECD_03107 0.87 +3.5
3,259,518 - +0.2
3,259,535 - -0.1

Or see this region's nucleotide sequence