Strain Fitness in Escherichia coli BL21 around ECD_02887

Experiment: Bas58

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02886 and ECD_02887 are separated by 50 nucleotidesECD_02887 and ECD_02888 are separated by 42 nucleotides ECD_02886: ECD_02886 - DUF3828 family putative periplasmic protein, at 3,025,087 to 3,026,013 _02886 ECD_02887: ECD_02887 - outer membrane lipoprotein, Lpp-like protein, at 3,026,064 to 3,026,321 _02887 ECD_02888: ECD_02888 - Radical SAM superfamily protein, at 3,026,364 to 3,028,583 _02888 Position (kb) 3026 3027Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 3025.160 kb on + strandat 3025.160 kb on + strandat 3025.161 kb on - strandat 3025.161 kb on - strandat 3025.161 kb on - strandat 3025.184 kb on - strand, within ECD_02886at 3025.193 kb on - strand, within ECD_02886at 3025.194 kb on + strand, within ECD_02886at 3025.321 kb on + strand, within ECD_02886at 3025.365 kb on - strand, within ECD_02886at 3025.365 kb on - strand, within ECD_02886at 3025.539 kb on + strand, within ECD_02886at 3025.571 kb on + strand, within ECD_02886at 3025.626 kb on + strand, within ECD_02886at 3025.627 kb on - strand, within ECD_02886at 3025.627 kb on - strand, within ECD_02886at 3025.627 kb on - strand, within ECD_02886at 3025.638 kb on + strand, within ECD_02886at 3025.639 kb on - strand, within ECD_02886at 3025.699 kb on - strand, within ECD_02886at 3025.738 kb on - strand, within ECD_02886at 3025.738 kb on - strand, within ECD_02886at 3025.745 kb on + strand, within ECD_02886at 3025.759 kb on - strand, within ECD_02886at 3025.866 kb on + strand, within ECD_02886at 3025.866 kb on + strand, within ECD_02886at 3025.867 kb on - strand, within ECD_02886at 3025.907 kb on + strand, within ECD_02886at 3026.021 kb on + strandat 3026.022 kb on - strandat 3026.061 kb on + strandat 3026.061 kb on + strandat 3026.063 kb on + strandat 3026.171 kb on - strand, within ECD_02887at 3026.171 kb on - strand, within ECD_02887at 3026.171 kb on - strand, within ECD_02887at 3026.171 kb on - strand, within ECD_02887at 3026.226 kb on + strand, within ECD_02887at 3026.226 kb on + strand, within ECD_02887at 3026.226 kb on + strand, within ECD_02887at 3026.226 kb on + strand, within ECD_02887at 3026.227 kb on - strand, within ECD_02887at 3026.227 kb on - strand, within ECD_02887at 3026.247 kb on - strand, within ECD_02887at 3026.281 kb on - strand, within ECD_02887at 3026.306 kb on + strandat 3026.306 kb on + strandat 3026.307 kb on - strandat 3026.307 kb on - strandat 3026.307 kb on - strandat 3026.311 kb on - strandat 3026.480 kb on + strandat 3026.481 kb on - strandat 3026.560 kb on - strandat 3026.594 kb on + strand, within ECD_02888at 3026.714 kb on + strand, within ECD_02888at 3026.714 kb on + strand, within ECD_02888at 3026.715 kb on - strand, within ECD_02888at 3026.716 kb on + strand, within ECD_02888at 3026.717 kb on - strand, within ECD_02888at 3026.749 kb on + strand, within ECD_02888at 3026.749 kb on + strand, within ECD_02888at 3026.752 kb on + strand, within ECD_02888at 3026.752 kb on + strand, within ECD_02888at 3026.753 kb on - strand, within ECD_02888at 3026.753 kb on - strand, within ECD_02888at 3026.753 kb on - strand, within ECD_02888at 3026.753 kb on - strand, within ECD_02888at 3026.797 kb on - strand, within ECD_02888at 3026.888 kb on - strand, within ECD_02888at 3026.888 kb on - strand, within ECD_02888at 3026.899 kb on + strand, within ECD_02888at 3026.899 kb on + strand, within ECD_02888at 3026.900 kb on - strand, within ECD_02888at 3026.900 kb on - strand, within ECD_02888at 3026.910 kb on - strand, within ECD_02888at 3026.910 kb on - strand, within ECD_02888at 3026.927 kb on - strand, within ECD_02888at 3026.931 kb on - strand, within ECD_02888at 3026.931 kb on - strand, within ECD_02888at 3026.956 kb on + strand, within ECD_02888at 3026.956 kb on + strand, within ECD_02888at 3026.957 kb on - strand, within ECD_02888at 3026.957 kb on - strand, within ECD_02888at 3027.006 kb on - strand, within ECD_02888at 3027.062 kb on + strand, within ECD_02888at 3027.065 kb on - strand, within ECD_02888at 3027.065 kb on - strand, within ECD_02888at 3027.096 kb on + strand, within ECD_02888at 3027.096 kb on + strand, within ECD_02888at 3027.152 kb on - strand, within ECD_02888at 3027.185 kb on + strand, within ECD_02888at 3027.185 kb on + strand, within ECD_02888at 3027.263 kb on + strand, within ECD_02888at 3027.263 kb on + strand, within ECD_02888at 3027.263 kb on + strand, within ECD_02888at 3027.263 kb on + strand, within ECD_02888at 3027.263 kb on + strand, within ECD_02888at 3027.264 kb on - strand, within ECD_02888at 3027.264 kb on - strand, within ECD_02888at 3027.264 kb on - strand, within ECD_02888at 3027.264 kb on - strand, within ECD_02888at 3027.264 kb on - strand, within ECD_02888at 3027.264 kb on - strand, within ECD_02888at 3027.264 kb on - strand, within ECD_02888at 3027.264 kb on - strand, within ECD_02888at 3027.264 kb on - strand, within ECD_02888at 3027.264 kb on - strand, within ECD_02888at 3027.264 kb on - strand, within ECD_02888at 3027.265 kb on + strand, within ECD_02888at 3027.265 kb on + strand, within ECD_02888at 3027.265 kb on + strand, within ECD_02888at 3027.265 kb on + strand, within ECD_02888at 3027.265 kb on + strand, within ECD_02888at 3027.265 kb on + strand, within ECD_02888at 3027.265 kb on + strand, within ECD_02888at 3027.265 kb on + strand, within ECD_02888at 3027.265 kb on + strand, within ECD_02888at 3027.265 kb on + strand, within ECD_02888at 3027.265 kb on + strand, within ECD_02888at 3027.265 kb on + strand, within ECD_02888at 3027.266 kb on - strand, within ECD_02888at 3027.266 kb on - strand, within ECD_02888at 3027.266 kb on - strand, within ECD_02888at 3027.266 kb on - strand, within ECD_02888at 3027.266 kb on - strand, within ECD_02888at 3027.266 kb on - strand, within ECD_02888at 3027.266 kb on - strand, within ECD_02888at 3027.266 kb on - strand, within ECD_02888at 3027.266 kb on - strand, within ECD_02888at 3027.266 kb on - strand, within ECD_02888at 3027.266 kb on - strand, within ECD_02888at 3027.266 kb on - strand, within ECD_02888at 3027.266 kb on - strand, within ECD_02888at 3027.266 kb on - strand, within ECD_02888at 3027.266 kb on - strand, within ECD_02888at 3027.266 kb on - strand, within ECD_02888at 3027.266 kb on - strand, within ECD_02888

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas58
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3,025,160 + -0.5
3,025,160 + +0.2
3,025,161 - -1.2
3,025,161 - +0.1
3,025,161 - -1.1
3,025,184 - ECD_02886 0.10 +2.4
3,025,193 - ECD_02886 0.11 +0.4
3,025,194 + ECD_02886 0.12 +1.4
3,025,321 + ECD_02886 0.25 -1.8
3,025,365 - ECD_02886 0.30 -0.3
3,025,365 - ECD_02886 0.30 +2.1
3,025,539 + ECD_02886 0.49 -0.4
3,025,571 + ECD_02886 0.52 -1.1
3,025,626 + ECD_02886 0.58 -1.1
3,025,627 - ECD_02886 0.58 -0.4
3,025,627 - ECD_02886 0.58 -0.5
3,025,627 - ECD_02886 0.58 -1.9
3,025,638 + ECD_02886 0.59 +0.1
3,025,639 - ECD_02886 0.60 -0.7
3,025,699 - ECD_02886 0.66 +1.9
3,025,738 - ECD_02886 0.70 -0.5
3,025,738 - ECD_02886 0.70 +0.1
3,025,745 + ECD_02886 0.71 +0.9
3,025,759 - ECD_02886 0.72 -0.4
3,025,866 + ECD_02886 0.84 -1.3
3,025,866 + ECD_02886 0.84 +1.9
3,025,867 - ECD_02886 0.84 -0.4
3,025,907 + ECD_02886 0.88 +0.2
3,026,021 + -0.2
3,026,022 - -1.4
3,026,061 + -2.6
3,026,061 + -0.4
3,026,063 + +1.2
3,026,171 - ECD_02887 0.41 -3.1
3,026,171 - ECD_02887 0.41 +3.4
3,026,171 - ECD_02887 0.41 +3.2
3,026,171 - ECD_02887 0.41 -1.1
3,026,226 + ECD_02887 0.63 +2.2
3,026,226 + ECD_02887 0.63 -1.1
3,026,226 + ECD_02887 0.63 +3.2
3,026,226 + ECD_02887 0.63 +0.0
3,026,227 - ECD_02887 0.63 +0.5
3,026,227 - ECD_02887 0.63 +0.0
3,026,247 - ECD_02887 0.71 +1.4
3,026,281 - ECD_02887 0.84 +0.6
3,026,306 + +1.6
3,026,306 + -0.7
3,026,307 - +0.1
3,026,307 - -2.2
3,026,307 - +0.5
3,026,311 - -2.0
3,026,480 + -1.1
3,026,481 - -0.3
3,026,560 - +2.6
3,026,594 + ECD_02888 0.10 +0.3
3,026,714 + ECD_02888 0.16 -0.3
3,026,714 + ECD_02888 0.16 +1.9
3,026,715 - ECD_02888 0.16 +0.1
3,026,716 + ECD_02888 0.16 -1.1
3,026,717 - ECD_02888 0.16 -0.1
3,026,749 + ECD_02888 0.17 -1.4
3,026,749 + ECD_02888 0.17 +2.8
3,026,752 + ECD_02888 0.17 -1.2
3,026,752 + ECD_02888 0.17 -0.4
3,026,753 - ECD_02888 0.18 -0.8
3,026,753 - ECD_02888 0.18 +1.8
3,026,753 - ECD_02888 0.18 -0.3
3,026,753 - ECD_02888 0.18 +0.4
3,026,797 - ECD_02888 0.20 -2.4
3,026,888 - ECD_02888 0.24 +0.8
3,026,888 - ECD_02888 0.24 -0.6
3,026,899 + ECD_02888 0.24 +0.4
3,026,899 + ECD_02888 0.24 -0.7
3,026,900 - ECD_02888 0.24 +0.5
3,026,900 - ECD_02888 0.24 +2.0
3,026,910 - ECD_02888 0.25 +3.5
3,026,910 - ECD_02888 0.25 +2.9
3,026,927 - ECD_02888 0.25 +0.8
3,026,931 - ECD_02888 0.26 -1.8
3,026,931 - ECD_02888 0.26 -0.1
3,026,956 + ECD_02888 0.27 -1.1
3,026,956 + ECD_02888 0.27 -0.2
3,026,957 - ECD_02888 0.27 +0.1
3,026,957 - ECD_02888 0.27 -1.8
3,027,006 - ECD_02888 0.29 +3.2
3,027,062 + ECD_02888 0.31 -0.1
3,027,065 - ECD_02888 0.32 +0.6
3,027,065 - ECD_02888 0.32 +0.6
3,027,096 + ECD_02888 0.33 +0.3
3,027,096 + ECD_02888 0.33 -0.6
3,027,152 - ECD_02888 0.35 -1.1
3,027,185 + ECD_02888 0.37 -0.9
3,027,185 + ECD_02888 0.37 -0.5
3,027,263 + ECD_02888 0.40 -0.1
3,027,263 + ECD_02888 0.40 +3.8
3,027,263 + ECD_02888 0.40 -0.4
3,027,263 + ECD_02888 0.40 -1.2
3,027,263 + ECD_02888 0.40 +2.0
3,027,264 - ECD_02888 0.41 +2.7
3,027,264 - ECD_02888 0.41 +1.6
3,027,264 - ECD_02888 0.41 +2.8
3,027,264 - ECD_02888 0.41 -0.7
3,027,264 - ECD_02888 0.41 -1.1
3,027,264 - ECD_02888 0.41 -0.5
3,027,264 - ECD_02888 0.41 +2.5
3,027,264 - ECD_02888 0.41 -1.2
3,027,264 - ECD_02888 0.41 -0.8
3,027,264 - ECD_02888 0.41 -0.5
3,027,264 - ECD_02888 0.41 +2.5
3,027,265 + ECD_02888 0.41 +1.0
3,027,265 + ECD_02888 0.41 +1.9
3,027,265 + ECD_02888 0.41 +3.9
3,027,265 + ECD_02888 0.41 -0.1
3,027,265 + ECD_02888 0.41 +2.9
3,027,265 + ECD_02888 0.41 -0.3
3,027,265 + ECD_02888 0.41 +0.2
3,027,265 + ECD_02888 0.41 +0.5
3,027,265 + ECD_02888 0.41 +2.8
3,027,265 + ECD_02888 0.41 -0.1
3,027,265 + ECD_02888 0.41 +1.5
3,027,265 + ECD_02888 0.41 -0.1
3,027,266 - ECD_02888 0.41 +0.4
3,027,266 - ECD_02888 0.41 +1.8
3,027,266 - ECD_02888 0.41 +0.0
3,027,266 - ECD_02888 0.41 +1.5
3,027,266 - ECD_02888 0.41 +1.4
3,027,266 - ECD_02888 0.41 -1.9
3,027,266 - ECD_02888 0.41 -0.9
3,027,266 - ECD_02888 0.41 +1.5
3,027,266 - ECD_02888 0.41 -0.6
3,027,266 - ECD_02888 0.41 +0.3
3,027,266 - ECD_02888 0.41 +1.1
3,027,266 - ECD_02888 0.41 -0.4
3,027,266 - ECD_02888 0.41 +0.9
3,027,266 - ECD_02888 0.41 -1.5
3,027,266 - ECD_02888 0.41 +1.6
3,027,266 - ECD_02888 0.41 +0.0
3,027,266 - ECD_02888 0.41 +0.1

Or see this region's nucleotide sequence