Experiment: Bas58
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02621 and ECD_02622 are separated by 317 nucleotides ECD_02622 and ECD_04351 are separated by 138 nucleotides ECD_04351 and ECD_02623 are separated by 13 nucleotides
ECD_02621: ECD_02621 - hypothetical protein, at 2,736,170 to 2,737,018
_02621
ECD_02622: ECD_02622 - 7-carboxy-7-deazaguanine synthase; queosine biosynthesis, at 2,737,336 to 2,738,007
_02622
ECD_04351: ECD_04351 - membrane stress resistance protein, at 2,738,146 to 2,738,286
_04351
ECD_02623: ECD_02623 - TPM domain protein, putative phosphatase, at 2,738,300 to 2,739,172
_02623
Position (kb)
2737
2738
2739 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2736.476 kb on - strand, within ECD_02621 at 2736.477 kb on + strand, within ECD_02621 at 2736.632 kb on + strand, within ECD_02621 at 2736.633 kb on - strand, within ECD_02621 at 2736.633 kb on - strand, within ECD_02621 at 2736.634 kb on + strand, within ECD_02621 at 2736.634 kb on + strand, within ECD_02621 at 2736.756 kb on + strand, within ECD_02621 at 2736.757 kb on - strand, within ECD_02621 at 2736.876 kb on - strand, within ECD_02621 at 2736.877 kb on + strand, within ECD_02621 at 2737.047 kb on + strand at 2737.324 kb on - strand at 2737.352 kb on + strand at 2737.356 kb on + strand at 2737.356 kb on + strand at 2737.487 kb on - strand, within ECD_02622 at 2737.634 kb on - strand, within ECD_02622 at 2737.668 kb on + strand, within ECD_02622 at 2737.813 kb on - strand, within ECD_02622 at 2737.813 kb on - strand, within ECD_02622 at 2738.008 kb on - strand at 2738.008 kb on - strand at 2738.029 kb on - strand at 2738.401 kb on + strand, within ECD_02623 at 2738.484 kb on + strand, within ECD_02623 at 2738.626 kb on - strand, within ECD_02623 at 2738.785 kb on + strand, within ECD_02623
Per-strain Table
Position Strand Gene LocusTag Fraction Bas58 remove 2,736,476 - ECD_02621 0.36 +1.0 2,736,477 + ECD_02621 0.36 +0.1 2,736,632 + ECD_02621 0.54 -0.4 2,736,633 - ECD_02621 0.55 -0.3 2,736,633 - ECD_02621 0.55 -0.6 2,736,634 + ECD_02621 0.55 +0.4 2,736,634 + ECD_02621 0.55 +0.8 2,736,756 + ECD_02621 0.69 -0.0 2,736,757 - ECD_02621 0.69 +1.3 2,736,876 - ECD_02621 0.83 -1.3 2,736,877 + ECD_02621 0.83 -0.0 2,737,047 + +0.2 2,737,324 - +0.7 2,737,352 + -3.3 2,737,356 + -2.0 2,737,356 + -2.0 2,737,487 - ECD_02622 0.22 -0.8 2,737,634 - ECD_02622 0.44 -1.4 2,737,668 + ECD_02622 0.49 -0.8 2,737,813 - ECD_02622 0.71 -3.7 2,737,813 - ECD_02622 0.71 -1.0 2,738,008 - -0.2 2,738,008 - +3.4 2,738,029 - +2.7 2,738,401 + ECD_02623 0.12 -0.4 2,738,484 + ECD_02623 0.21 +1.3 2,738,626 - ECD_02623 0.37 -0.0 2,738,785 + ECD_02623 0.56 +0.3
Or see this region's nucleotide sequence