Strain Fitness in Escherichia coli BL21 around ECD_02146

Experiment: Bas58

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02145 and ECD_02146 are separated by 166 nucleotidesECD_02146 and ECD_02147 overlap by 4 nucleotides ECD_02145: ECD_02145 - hybrid sensory kinase in two-component regulatory system with RcsB and YojN, at 2,207,388 to 2,210,237 _02145 ECD_02146: ECD_02146 - sensory histidine kinase in two-component regulatory system with AtoC, at 2,210,404 to 2,212,230 _02146 ECD_02147: ECD_02147 - fused response regulator of ato operon, in two-component system with AtoS: response regulator/sigma54 interaction protein, at 2,212,227 to 2,213,612 _02147 Position (kb) 2210 2211 2212 2213Strain fitness (log2 ratio) -1 0 1 2at 2209.701 kb on - strand, within ECD_02145at 2210.014 kb on + strandat 2210.192 kb on - strandat 2210.192 kb on - strandat 2210.378 kb on - strandat 2210.411 kb on - strandat 2210.490 kb on + strandat 2210.493 kb on + strandat 2210.507 kb on + strandat 2210.713 kb on + strand, within ECD_02146at 2210.759 kb on + strand, within ECD_02146at 2210.826 kb on + strand, within ECD_02146at 2211.154 kb on - strand, within ECD_02146at 2211.192 kb on + strand, within ECD_02146at 2211.255 kb on - strand, within ECD_02146at 2211.255 kb on - strand, within ECD_02146at 2211.255 kb on - strand, within ECD_02146at 2211.342 kb on + strand, within ECD_02146at 2211.602 kb on + strand, within ECD_02146at 2211.607 kb on - strand, within ECD_02146at 2211.669 kb on - strand, within ECD_02146at 2211.669 kb on - strand, within ECD_02146at 2211.852 kb on - strand, within ECD_02146at 2211.914 kb on + strand, within ECD_02146at 2211.985 kb on + strand, within ECD_02146at 2212.227 kb on - strandat 2212.236 kb on - strandat 2212.348 kb on + strandat 2212.479 kb on + strand, within ECD_02147at 2212.480 kb on - strand, within ECD_02147at 2212.531 kb on - strand, within ECD_02147at 2212.536 kb on - strand, within ECD_02147at 2212.996 kb on + strand, within ECD_02147at 2213.104 kb on + strand, within ECD_02147at 2213.158 kb on + strand, within ECD_02147at 2213.193 kb on - strand, within ECD_02147

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas58
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2,209,701 - ECD_02145 0.81 -1.0
2,210,014 + +0.4
2,210,192 - -0.3
2,210,192 - -0.3
2,210,378 - +0.7
2,210,411 - -0.1
2,210,490 + +0.1
2,210,493 + +0.2
2,210,507 + +0.8
2,210,713 + ECD_02146 0.17 +1.1
2,210,759 + ECD_02146 0.19 +0.6
2,210,826 + ECD_02146 0.23 +0.8
2,211,154 - ECD_02146 0.41 -0.2
2,211,192 + ECD_02146 0.43 -0.6
2,211,255 - ECD_02146 0.47 +0.4
2,211,255 - ECD_02146 0.47 +1.1
2,211,255 - ECD_02146 0.47 +1.2
2,211,342 + ECD_02146 0.51 +0.1
2,211,602 + ECD_02146 0.66 +0.9
2,211,607 - ECD_02146 0.66 +0.6
2,211,669 - ECD_02146 0.69 +0.0
2,211,669 - ECD_02146 0.69 +0.6
2,211,852 - ECD_02146 0.79 +0.1
2,211,914 + ECD_02146 0.83 +1.7
2,211,985 + ECD_02146 0.87 -0.2
2,212,227 - +0.3
2,212,236 - +0.5
2,212,348 + -0.5
2,212,479 + ECD_02147 0.18 -0.1
2,212,480 - ECD_02147 0.18 +1.1
2,212,531 - ECD_02147 0.22 +2.4
2,212,536 - ECD_02147 0.22 -0.8
2,212,996 + ECD_02147 0.55 +0.7
2,213,104 + ECD_02147 0.63 -0.3
2,213,158 + ECD_02147 0.67 +0.5
2,213,193 - ECD_02147 0.70 -0.9

Or see this region's nucleotide sequence