Strain Fitness in Escherichia coli BL21 around ECD_02077

Experiment: Bas58

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02076 and ECD_02077 are separated by 242 nucleotidesECD_02077 and ECD_02078 are separated by 15 nucleotides ECD_02076: ECD_02076 - dihydropyrimidine dehydrogenase, NADH-dependent, subunit C, at 2,130,169 to 2,131,404 _02076 ECD_02077: ECD_02077 - methyl-galactoside transporter subunit, at 2,131,647 to 2,132,657 _02077 ECD_02078: ECD_02078 - methyl-galactoside ABC transporter ATPase, at 2,132,673 to 2,134,193 _02078 Position (kb) 2131 2132 2133Strain fitness (log2 ratio) -1 0 1at 2130.801 kb on + strand, within ECD_02076at 2131.695 kb on - strandat 2131.872 kb on - strand, within ECD_02077at 2132.093 kb on - strand, within ECD_02077at 2132.105 kb on - strand, within ECD_02077at 2132.150 kb on + strand, within ECD_02077at 2132.151 kb on - strand, within ECD_02077at 2133.391 kb on - strand, within ECD_02078

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas58
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2,130,801 + ECD_02076 0.51 +0.5
2,131,695 - -0.6
2,131,872 - ECD_02077 0.22 -1.1
2,132,093 - ECD_02077 0.44 +1.4
2,132,105 - ECD_02077 0.45 +0.8
2,132,150 + ECD_02077 0.50 +0.2
2,132,151 - ECD_02077 0.50 +0.5
2,133,391 - ECD_02078 0.47 -0.1

Or see this region's nucleotide sequence