Strain Fitness in Escherichia coli BL21 around ECD_01968

Experiment: Bas58

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01966 and ECD_01967 are separated by 2 nucleotidesECD_01967 and ECD_01968 are separated by 5 nucleotidesECD_01968 and ECD_01969 are separated by 658 nucleotides ECD_01966: ECD_01966 - colanic acid production tyrosine-protein kinase; autokinase; Ugd phosphorylase, at 2,032,497 to 2,034,659 _01966 ECD_01967: ECD_01967 - colanic acid production protein-tyrosine-phosphatase; Wzc-P dephosphorylase, at 2,034,662 to 2,035,105 _01967 ECD_01968: ECD_01968 - colanic acid export protein; outer membrane auxillary lipoprotein, at 2,035,111 to 2,036,250 _01968 ECD_01969: ECD_01969 - inner membrane protein, at 2,036,909 to 2,038,492 _01969 Position (kb) 2035 2036 2037Strain fitness (log2 ratio) -1 0 1 2at 2034.663 kb on + strandat 2034.880 kb on - strand, within ECD_01967at 2035.089 kb on - strandat 2035.099 kb on + strandat 2035.164 kb on + strandat 2035.224 kb on - strandat 2035.236 kb on - strand, within ECD_01968at 2035.298 kb on + strand, within ECD_01968at 2035.302 kb on + strand, within ECD_01968at 2035.730 kb on + strand, within ECD_01968at 2035.810 kb on - strand, within ECD_01968at 2035.860 kb on + strand, within ECD_01968at 2035.972 kb on - strand, within ECD_01968at 2036.063 kb on - strand, within ECD_01968at 2036.905 kb on + strandat 2036.905 kb on + strandat 2036.905 kb on + strandat 2036.905 kb on + strandat 2036.908 kb on + strandat 2037.171 kb on + strand, within ECD_01969

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas58
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2,034,663 + +0.9
2,034,880 - ECD_01967 0.49 +0.5
2,035,089 - +2.1
2,035,099 + -0.9
2,035,164 + +0.4
2,035,224 - +1.3
2,035,236 - ECD_01968 0.11 +0.6
2,035,298 + ECD_01968 0.16 +0.7
2,035,302 + ECD_01968 0.17 +1.1
2,035,730 + ECD_01968 0.54 +0.5
2,035,810 - ECD_01968 0.61 -0.7
2,035,860 + ECD_01968 0.66 +0.5
2,035,972 - ECD_01968 0.76 +0.7
2,036,063 - ECD_01968 0.84 +0.9
2,036,905 + +0.1
2,036,905 + +2.3
2,036,905 + +0.7
2,036,905 + +1.3
2,036,908 + -1.5
2,037,171 + ECD_01969 0.17 +0.1

Or see this region's nucleotide sequence