Experiment: Bas58
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01966 and ECD_01967 are separated by 2 nucleotides ECD_01967 and ECD_01968 are separated by 5 nucleotides ECD_01968 and ECD_01969 are separated by 658 nucleotides
ECD_01966: ECD_01966 - colanic acid production tyrosine-protein kinase; autokinase; Ugd phosphorylase, at 2,032,497 to 2,034,659
_01966
ECD_01967: ECD_01967 - colanic acid production protein-tyrosine-phosphatase; Wzc-P dephosphorylase, at 2,034,662 to 2,035,105
_01967
ECD_01968: ECD_01968 - colanic acid export protein; outer membrane auxillary lipoprotein, at 2,035,111 to 2,036,250
_01968
ECD_01969: ECD_01969 - inner membrane protein, at 2,036,909 to 2,038,492
_01969
Position (kb)
2035
2036
2037 Strain fitness (log2 ratio)
-1
0
1
2 at 2034.663 kb on + strand at 2034.880 kb on - strand, within ECD_01967 at 2035.089 kb on - strand at 2035.099 kb on + strand at 2035.164 kb on + strand at 2035.224 kb on - strand at 2035.236 kb on - strand, within ECD_01968 at 2035.298 kb on + strand, within ECD_01968 at 2035.302 kb on + strand, within ECD_01968 at 2035.730 kb on + strand, within ECD_01968 at 2035.810 kb on - strand, within ECD_01968 at 2035.860 kb on + strand, within ECD_01968 at 2035.972 kb on - strand, within ECD_01968 at 2036.063 kb on - strand, within ECD_01968 at 2036.905 kb on + strand at 2036.905 kb on + strand at 2036.905 kb on + strand at 2036.905 kb on + strand at 2036.908 kb on + strand at 2037.171 kb on + strand, within ECD_01969
Per-strain Table
Position Strand Gene LocusTag Fraction Bas58 remove 2,034,663 + +0.9 2,034,880 - ECD_01967 0.49 +0.5 2,035,089 - +2.1 2,035,099 + -0.9 2,035,164 + +0.4 2,035,224 - +1.3 2,035,236 - ECD_01968 0.11 +0.6 2,035,298 + ECD_01968 0.16 +0.7 2,035,302 + ECD_01968 0.17 +1.1 2,035,730 + ECD_01968 0.54 +0.5 2,035,810 - ECD_01968 0.61 -0.7 2,035,860 + ECD_01968 0.66 +0.5 2,035,972 - ECD_01968 0.76 +0.7 2,036,063 - ECD_01968 0.84 +0.9 2,036,905 + +0.1 2,036,905 + +2.3 2,036,905 + +0.7 2,036,905 + +1.3 2,036,908 + -1.5 2,037,171 + ECD_01969 0.17 +0.1
Or see this region's nucleotide sequence