Strain Fitness in Escherichia coli BL21 around ECD_01959

Experiment: Bas58

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01957 and ECD_01958 are separated by 2 nucleotidesECD_01958 and ECD_01959 are separated by 2 nucleotidesECD_01959 and ECD_01960 are separated by 26 nucleotidesECD_01960 and ECD_01961 are separated by 15 nucleotides ECD_01957: ECD_01957 - GDP-mannose mannosyl hydrolase, at 2,024,749 to 2,025,228 _01957 ECD_01958: ECD_01958 - bifunctional GDP-fucose synthetase: GDP-4-dehydro-6-deoxy-D-mannose epimerase/ GDP-4-dehydro-6-L-deoxygalactose reductase, at 2,025,231 to 2,026,196 _01958 ECD_01959: ECD_01959 - GDP-D-mannose dehydratase, NAD(P)-binding, at 2,026,199 to 2,027,320 _01959 ECD_01960: ECD_01960 - putative acyl transferase, at 2,027,347 to 2,027,895 _01960 ECD_01961: ECD_01961 - putative glycosyl transferase, at 2,027,911 to 2,028,657 _01961 Position (kb) 2026 2027 2028Strain fitness (log2 ratio) -1 0 1 2at 2025.233 kb on - strandat 2025.271 kb on + strandat 2025.360 kb on - strand, within ECD_01958at 2025.748 kb on + strand, within ECD_01958at 2025.869 kb on + strand, within ECD_01958at 2025.870 kb on - strand, within ECD_01958at 2026.098 kb on + strand, within ECD_01958at 2026.099 kb on - strand, within ECD_01958at 2026.228 kb on - strandat 2026.544 kb on + strand, within ECD_01959at 2026.620 kb on - strand, within ECD_01959at 2026.620 kb on - strand, within ECD_01959at 2026.833 kb on + strand, within ECD_01959at 2027.017 kb on + strand, within ECD_01959at 2027.120 kb on - strand, within ECD_01959at 2027.120 kb on - strand, within ECD_01959at 2027.272 kb on - strandat 2027.530 kb on - strand, within ECD_01960at 2027.579 kb on - strand, within ECD_01960

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas58
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2,025,233 - +0.1
2,025,271 + -0.6
2,025,360 - ECD_01958 0.13 +1.0
2,025,748 + ECD_01958 0.54 -0.0
2,025,869 + ECD_01958 0.66 -0.6
2,025,870 - ECD_01958 0.66 -0.4
2,026,098 + ECD_01958 0.90 +0.1
2,026,099 - ECD_01958 0.90 -1.7
2,026,228 - -1.5
2,026,544 + ECD_01959 0.31 -1.2
2,026,620 - ECD_01959 0.38 -0.2
2,026,620 - ECD_01959 0.38 -0.5
2,026,833 + ECD_01959 0.57 -0.1
2,027,017 + ECD_01959 0.73 -1.7
2,027,120 - ECD_01959 0.82 +2.7
2,027,120 - ECD_01959 0.82 -0.7
2,027,272 - +0.7
2,027,530 - ECD_01960 0.33 -0.1
2,027,579 - ECD_01960 0.42 +0.1

Or see this region's nucleotide sequence