Strain Fitness in Escherichia coli BL21 around ECD_01956

Experiment: Bas58

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01955 and ECD_01956 are separated by 2 nucleotidesECD_01956 and ECD_01957 overlap by 4 nucleotidesECD_01957 and ECD_01958 are separated by 2 nucleotides ECD_01955: ECD_01955 - mannose-1-phosphate guanyltransferase, at 2,022,090 to 2,023,526 _01955 ECD_01956: ECD_01956 - putative glycosyl transferase, at 2,023,529 to 2,024,752 _01956 ECD_01957: ECD_01957 - GDP-mannose mannosyl hydrolase, at 2,024,749 to 2,025,228 _01957 ECD_01958: ECD_01958 - bifunctional GDP-fucose synthetase: GDP-4-dehydro-6-deoxy-D-mannose epimerase/ GDP-4-dehydro-6-L-deoxygalactose reductase, at 2,025,231 to 2,026,196 _01958 Position (kb) 2023 2024 2025Strain fitness (log2 ratio) -1 0 1 2 3at 2022.592 kb on + strand, within ECD_01955at 2022.592 kb on + strand, within ECD_01955at 2022.593 kb on - strand, within ECD_01955at 2022.914 kb on + strand, within ECD_01955at 2023.069 kb on - strand, within ECD_01955at 2023.259 kb on + strand, within ECD_01955at 2023.280 kb on + strand, within ECD_01955at 2023.281 kb on - strand, within ECD_01955at 2023.549 kb on + strandat 2023.760 kb on + strand, within ECD_01956at 2023.869 kb on + strand, within ECD_01956at 2024.535 kb on + strand, within ECD_01956at 2024.596 kb on - strand, within ECD_01956at 2024.626 kb on - strand, within ECD_01956at 2024.925 kb on - strand, within ECD_01957at 2024.963 kb on + strand, within ECD_01957at 2025.233 kb on - strandat 2025.271 kb on + strandat 2025.360 kb on - strand, within ECD_01958at 2025.748 kb on + strand, within ECD_01958

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas58
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2,022,592 + ECD_01955 0.35 +0.3
2,022,592 + ECD_01955 0.35 -1.1
2,022,593 - ECD_01955 0.35 +0.1
2,022,914 + ECD_01955 0.57 -0.7
2,023,069 - ECD_01955 0.68 +0.2
2,023,259 + ECD_01955 0.81 -1.4
2,023,280 + ECD_01955 0.83 +2.1
2,023,281 - ECD_01955 0.83 +0.6
2,023,549 + +0.1
2,023,760 + ECD_01956 0.19 -0.7
2,023,869 + ECD_01956 0.28 -0.2
2,024,535 + ECD_01956 0.82 +2.9
2,024,596 - ECD_01956 0.87 -1.2
2,024,626 - ECD_01956 0.90 +1.1
2,024,925 - ECD_01957 0.37 -0.0
2,024,963 + ECD_01957 0.45 -1.3
2,025,233 - +0.1
2,025,271 + -0.6
2,025,360 - ECD_01958 0.13 +1.0
2,025,748 + ECD_01958 0.54 -0.0

Or see this region's nucleotide sequence