Experiment: Bas58
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01896 and ECD_t00035 are separated by 4 nucleotides ECD_t00035 and ECD_01897 are separated by 37 nucleotides ECD_01897 and ECD_01898 are separated by 101 nucleotides
ECD_01896: ECD_01896 - putative multdrug exporter, MATE family, at 1,963,351 to 1,964,994
_01896
ECD_t00035: ECD_t00035 - tRNA-Asn, at 1,964,999 to 1,965,074
_t00035
ECD_01897: ECD_01897 - ssuEADCB/tauABCD operon transcriptional activator, at 1,965,112 to 1,966,062
_01897
ECD_01898: ECD_01898 - nitrogen assimilation regulon transcriptional regulator; autorepressor, at 1,966,164 to 1,967,081
_01898
Position (kb) 1965
1966
1967 Strain fitness (log2 ratio) -1
0
1 at 1964.542 kb on - strand, within ECD_01896 at 1965.115 kb on + strand at 1965.397 kb on + strand, within ECD_01897 at 1965.558 kb on + strand, within ECD_01897 at 1965.828 kb on + strand, within ECD_01897 at 1966.711 kb on + strand, within ECD_01898 at 1966.712 kb on - strand, within ECD_01898 at 1966.867 kb on - strand, within ECD_01898
Per-strain Table
Position Strand Gene LocusTag Fraction Bas58 remove 1,964,542 - ECD_01896 0.72 +0.9 1,965,115 + -0.0 1,965,397 + ECD_01897 0.30 +1.6 1,965,558 + ECD_01897 0.47 -0.1 1,965,828 + ECD_01897 0.75 +1.1 1,966,711 + ECD_01898 0.60 +1.2 1,966,712 - ECD_01898 0.60 +0.6 1,966,867 - ECD_01898 0.77 +0.3
Or see this region's nucleotide sequence