Strain Fitness in Escherichia coli BL21 around ECD_01801

Experiment: Bas58

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01800 and ECD_01801 are separated by 191 nucleotidesECD_01801 and ECD_01802 are separated by 19 nucleotidesECD_01802 and ECD_01803 are separated by 96 nucleotides ECD_01800: ECD_01800 - putative endopeptidase, at 1,857,420 to 1,858,301 _01800 ECD_01801: ECD_01801 - carboxy-terminal protease for penicillin-binding protein 3, at 1,858,493 to 1,860,541 _01801 ECD_01802: ECD_01802 - RNA chaperone, putative ProP translation regulator, at 1,860,561 to 1,861,259 _01802 ECD_01803: ECD_01803 - free methionine-(R)-sulfoxide reductase, at 1,861,356 to 1,861,907 _01803 Position (kb) 1858 1859 1860 1861Strain fitness (log2 ratio) -1 0 1 2 3at 1857.510 kb on - strand, within ECD_01800at 1857.719 kb on - strand, within ECD_01800at 1858.007 kb on - strand, within ECD_01800at 1858.062 kb on - strand, within ECD_01800at 1858.126 kb on - strand, within ECD_01800at 1858.222 kb on - strandat 1858.495 kb on - strandat 1858.717 kb on - strand, within ECD_01801at 1858.979 kb on - strand, within ECD_01801at 1858.979 kb on - strand, within ECD_01801at 1859.026 kb on - strand, within ECD_01801at 1859.061 kb on - strand, within ECD_01801at 1859.061 kb on - strand, within ECD_01801at 1859.073 kb on + strand, within ECD_01801at 1859.077 kb on + strand, within ECD_01801at 1859.078 kb on - strand, within ECD_01801at 1859.078 kb on - strand, within ECD_01801at 1859.078 kb on - strand, within ECD_01801at 1859.228 kb on - strand, within ECD_01801at 1859.230 kb on - strand, within ECD_01801at 1859.230 kb on - strand, within ECD_01801at 1859.230 kb on - strand, within ECD_01801at 1859.312 kb on - strand, within ECD_01801at 1859.446 kb on - strand, within ECD_01801at 1859.446 kb on - strand, within ECD_01801at 1859.530 kb on + strand, within ECD_01801at 1859.531 kb on - strand, within ECD_01801at 1859.550 kb on - strand, within ECD_01801at 1859.583 kb on - strand, within ECD_01801at 1859.621 kb on - strand, within ECD_01801at 1859.625 kb on - strand, within ECD_01801at 1859.723 kb on - strand, within ECD_01801at 1859.867 kb on - strand, within ECD_01801at 1860.038 kb on - strand, within ECD_01801at 1860.104 kb on - strand, within ECD_01801at 1860.104 kb on - strand, within ECD_01801at 1860.104 kb on - strand, within ECD_01801at 1860.105 kb on + strand, within ECD_01801at 1860.105 kb on + strand, within ECD_01801at 1860.106 kb on - strand, within ECD_01801at 1860.106 kb on - strand, within ECD_01801at 1860.157 kb on - strand, within ECD_01801at 1860.205 kb on - strand, within ECD_01801at 1860.467 kb on - strandat 1860.474 kb on - strandat 1860.642 kb on + strand, within ECD_01802at 1860.646 kb on - strand, within ECD_01802at 1860.973 kb on - strand, within ECD_01802at 1860.973 kb on - strand, within ECD_01802at 1860.973 kb on - strand, within ECD_01802at 1860.973 kb on - strand, within ECD_01802at 1860.973 kb on - strand, within ECD_01802at 1860.973 kb on - strand, within ECD_01802at 1860.973 kb on - strand, within ECD_01802at 1861.070 kb on - strand, within ECD_01802at 1861.090 kb on - strand, within ECD_01802at 1861.245 kb on - strandat 1861.245 kb on - strandat 1861.245 kb on - strandat 1861.273 kb on + strandat 1861.284 kb on + strandat 1861.284 kb on + strandat 1861.318 kb on - strandat 1861.318 kb on - strandat 1861.318 kb on - strandat 1861.319 kb on + strandat 1861.320 kb on - strandat 1861.320 kb on - strandat 1861.320 kb on - strandat 1861.341 kb on + strandat 1861.342 kb on - strandat 1861.435 kb on - strand, within ECD_01803at 1861.435 kb on - strand, within ECD_01803at 1861.435 kb on - strand, within ECD_01803at 1861.476 kb on - strand, within ECD_01803

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas58
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1,857,510 - ECD_01800 0.10 +0.3
1,857,719 - ECD_01800 0.34 -0.1
1,858,007 - ECD_01800 0.67 +0.0
1,858,062 - ECD_01800 0.73 +0.2
1,858,126 - ECD_01800 0.80 -0.4
1,858,222 - +0.3
1,858,495 - +0.2
1,858,717 - ECD_01801 0.11 +0.2
1,858,979 - ECD_01801 0.24 +1.3
1,858,979 - ECD_01801 0.24 +3.3
1,859,026 - ECD_01801 0.26 +1.1
1,859,061 - ECD_01801 0.28 +1.2
1,859,061 - ECD_01801 0.28 +1.4
1,859,073 + ECD_01801 0.28 +1.6
1,859,077 + ECD_01801 0.29 +2.9
1,859,078 - ECD_01801 0.29 +1.3
1,859,078 - ECD_01801 0.29 +1.3
1,859,078 - ECD_01801 0.29 +2.9
1,859,228 - ECD_01801 0.36 +1.4
1,859,230 - ECD_01801 0.36 +1.5
1,859,230 - ECD_01801 0.36 +1.6
1,859,230 - ECD_01801 0.36 +1.4
1,859,312 - ECD_01801 0.40 +1.5
1,859,446 - ECD_01801 0.47 +1.6
1,859,446 - ECD_01801 0.47 +2.4
1,859,530 + ECD_01801 0.51 +1.3
1,859,531 - ECD_01801 0.51 +1.6
1,859,550 - ECD_01801 0.52 +1.6
1,859,583 - ECD_01801 0.53 +1.8
1,859,621 - ECD_01801 0.55 +1.6
1,859,625 - ECD_01801 0.55 +1.6
1,859,723 - ECD_01801 0.60 +1.4
1,859,867 - ECD_01801 0.67 +3.7
1,860,038 - ECD_01801 0.75 +1.8
1,860,104 - ECD_01801 0.79 +2.3
1,860,104 - ECD_01801 0.79 +3.1
1,860,104 - ECD_01801 0.79 +1.5
1,860,105 + ECD_01801 0.79 +1.1
1,860,105 + ECD_01801 0.79 +1.7
1,860,106 - ECD_01801 0.79 +2.3
1,860,106 - ECD_01801 0.79 +1.3
1,860,157 - ECD_01801 0.81 +1.2
1,860,205 - ECD_01801 0.84 +2.0
1,860,467 - +2.0
1,860,474 - +2.0
1,860,642 + ECD_01802 0.12 +1.7
1,860,646 - ECD_01802 0.12 -0.3
1,860,973 - ECD_01802 0.59 -0.2
1,860,973 - ECD_01802 0.59 -0.5
1,860,973 - ECD_01802 0.59 -1.4
1,860,973 - ECD_01802 0.59 -1.0
1,860,973 - ECD_01802 0.59 -0.6
1,860,973 - ECD_01802 0.59 -0.8
1,860,973 - ECD_01802 0.59 +0.0
1,861,070 - ECD_01802 0.73 -0.7
1,861,090 - ECD_01802 0.76 +2.3
1,861,245 - -1.6
1,861,245 - -0.8
1,861,245 - +1.0
1,861,273 + -1.0
1,861,284 + +0.8
1,861,284 + +2.3
1,861,318 - -0.8
1,861,318 - -1.2
1,861,318 - -0.5
1,861,319 + +0.5
1,861,320 - -0.5
1,861,320 - -0.3
1,861,320 - -0.6
1,861,341 + -0.7
1,861,342 - +0.0
1,861,435 - ECD_01803 0.14 -0.5
1,861,435 - ECD_01803 0.14 -0.5
1,861,435 - ECD_01803 0.14 +0.7
1,861,476 - ECD_01803 0.22 -0.2

Or see this region's nucleotide sequence