Strain Fitness in Escherichia coli BL21 around ECD_01315

Experiment: Bas58

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01314 and ECD_01315 overlap by 1 nucleotidesECD_01315 and ECD_01316 are separated by 175 nucleotides ECD_01314: ECD_01314 - p-aminobenzoyl-glutamate hydrolase, B subunit, at 1,386,978 to 1,388,423 _01314 ECD_01315: ECD_01315 - p-aminobenzoyl-glutamate hydrolase, A subunit, at 1,388,423 to 1,389,733 _01315 ECD_01316: ECD_01316 - putative DNA-binding transcriptional regulator of abgABT operon, at 1,389,909 to 1,390,817 _01316 Position (kb) 1388 1389 1390Strain fitness (log2 ratio) -2 -1 0 1at 1387.742 kb on + strand, within ECD_01314at 1387.742 kb on + strand, within ECD_01314at 1388.002 kb on + strand, within ECD_01314at 1388.251 kb on - strand, within ECD_01314at 1388.757 kb on + strand, within ECD_01315at 1388.758 kb on - strand, within ECD_01315at 1388.758 kb on - strand, within ECD_01315at 1388.758 kb on - strand, within ECD_01315at 1389.222 kb on - strand, within ECD_01315at 1389.522 kb on - strand, within ECD_01315at 1389.567 kb on - strand, within ECD_01315at 1389.799 kb on - strandat 1389.828 kb on + strandat 1389.886 kb on - strandat 1389.998 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas58
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1,387,742 + ECD_01314 0.53 -0.9
1,387,742 + ECD_01314 0.53 -0.0
1,388,002 + ECD_01314 0.71 -0.7
1,388,251 - ECD_01314 0.88 +0.8
1,388,757 + ECD_01315 0.25 -2.0
1,388,758 - ECD_01315 0.26 -0.6
1,388,758 - ECD_01315 0.26 -0.9
1,388,758 - ECD_01315 0.26 -1.0
1,389,222 - ECD_01315 0.61 -0.0
1,389,522 - ECD_01315 0.84 -0.2
1,389,567 - ECD_01315 0.87 -0.2
1,389,799 - -1.5
1,389,828 + -0.3
1,389,886 - +0.6
1,389,998 + +0.8

Or see this region's nucleotide sequence