Experiment: Bas58
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00849 and ECD_00850 overlap by 4 nucleotides ECD_00850 and ECD_00851 are separated by 57 nucleotides ECD_00851 and ECD_00852 are separated by 235 nucleotides ECD_00852 and ECD_00853 are separated by 269 nucleotides ECD_00853 and ECD_00854 are separated by 29 nucleotides
ECD_00849: ECD_00849 - putative DNA-invertase, at 891,653 to 891,928
_00849
ECD_00850: ECD_00850 - putative regulator of late gene expression, at 891,925 to 892,293
_00850
ECD_00851: ECD_00851 - prophage P2 OGR-like protein, at 892,351 to 892,602
_00851
ECD_00852: ECD_00852 - putative transporter, at 892,838 to 894,523
_00852
ECD_00853: ECD_00853 - inner membrane protein, at 894,793 to 895,170
_00853
ECD_00854: ECD_00854 - glutaredoxin 1, redox coenzyme for ribonucleotide reductase (RNR1a), at 895,200 to 895,457
_00854
Position (kb) 892
893
894
895 Strain fitness (log2 ratio) -2
-1
0
1
2 at 891.883 kb on - strand, within ECD_00849 at 891.933 kb on + strand at 892.030 kb on + strand, within ECD_00850 at 892.109 kb on + strand, within ECD_00850 at 892.138 kb on + strand, within ECD_00850 at 892.200 kb on + strand, within ECD_00850 at 892.201 kb on - strand, within ECD_00850 at 892.218 kb on + strand, within ECD_00850 at 892.463 kb on - strand, within ECD_00851 at 892.844 kb on + strand at 892.845 kb on - strand at 892.909 kb on - strand at 892.940 kb on - strand at 892.951 kb on + strand at 893.038 kb on - strand, within ECD_00852 at 893.038 kb on - strand, within ECD_00852 at 893.038 kb on - strand, within ECD_00852 at 893.132 kb on - strand, within ECD_00852 at 893.261 kb on - strand, within ECD_00852 at 893.496 kb on - strand, within ECD_00852 at 893.496 kb on - strand, within ECD_00852 at 893.575 kb on + strand, within ECD_00852 at 893.732 kb on + strand, within ECD_00852 at 893.958 kb on - strand, within ECD_00852 at 894.246 kb on - strand, within ECD_00852 at 894.707 kb on + strand at 895.347 kb on - strand, within ECD_00854 at 895.347 kb on - strand, within ECD_00854 at 895.351 kb on - strand, within ECD_00854 at 895.354 kb on + strand, within ECD_00854 at 895.478 kb on + strand at 895.479 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas58 remove 891,883 - ECD_00849 0.83 -0.5 891,933 + -0.3 892,030 + ECD_00850 0.28 +1.8 892,109 + ECD_00850 0.50 +0.5 892,138 + ECD_00850 0.58 -0.4 892,200 + ECD_00850 0.75 +0.5 892,201 - ECD_00850 0.75 -0.1 892,218 + ECD_00850 0.79 +0.5 892,463 - ECD_00851 0.44 +1.1 892,844 + +0.9 892,845 - -0.3 892,909 - -0.6 892,940 - +0.7 892,951 + -2.2 893,038 - ECD_00852 0.12 -0.9 893,038 - ECD_00852 0.12 -0.6 893,038 - ECD_00852 0.12 +0.4 893,132 - ECD_00852 0.17 -0.5 893,261 - ECD_00852 0.25 +0.5 893,496 - ECD_00852 0.39 +0.1 893,496 - ECD_00852 0.39 -0.3 893,575 + ECD_00852 0.44 +0.7 893,732 + ECD_00852 0.53 +0.3 893,958 - ECD_00852 0.66 -0.3 894,246 - ECD_00852 0.84 +0.9 894,707 + -1.0 895,347 - ECD_00854 0.57 +0.8 895,347 - ECD_00854 0.57 +0.1 895,351 - ECD_00854 0.59 +0.1 895,354 + ECD_00854 0.60 -1.2 895,478 + -0.4 895,479 - -0.4
Or see this region's nucleotide sequence