Experiment: Bas58
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00743 and ECD_00744 overlap by 14 nucleotides ECD_00744 and ECD_00745 overlap by 8 nucleotides ECD_00745 and ECD_00746 are separated by 578 nucleotides
ECD_00743: ECD_00743 - 8-amino-7-oxononanoate synthase, at 794,374 to 795,528
_00743
ECD_00744: ECD_00744 - malonyl-ACP O-methyltransferase, SAM-dependent, at 795,515 to 796,270
_00744
ECD_00745: ECD_00745 - dethiobiotin synthetase, at 796,263 to 796,940
_00745
ECD_00746: ECD_00746 - exision nuclease of nucleotide excision repair, DNA damage recognition component, at 797,519 to 799,540
_00746
Position (kb) 796
797 Strain fitness (log2 ratio) -2
-1
0
1 at 795.354 kb on + strand, within ECD_00743 at 795.526 kb on + strand at 795.573 kb on - strand at 795.591 kb on + strand, within ECD_00744 at 795.651 kb on + strand, within ECD_00744 at 795.651 kb on + strand, within ECD_00744 at 795.724 kb on - strand, within ECD_00744 at 795.779 kb on + strand, within ECD_00744 at 795.779 kb on + strand, within ECD_00744 at 796.236 kb on - strand at 796.414 kb on + strand, within ECD_00745 at 796.439 kb on - strand, within ECD_00745 at 796.477 kb on + strand, within ECD_00745 at 796.696 kb on + strand, within ECD_00745 at 796.718 kb on + strand, within ECD_00745 at 796.719 kb on - strand, within ECD_00745 at 796.721 kb on + strand, within ECD_00745 at 796.751 kb on - strand, within ECD_00745 at 796.825 kb on - strand, within ECD_00745 at 796.825 kb on - strand, within ECD_00745 at 796.826 kb on + strand, within ECD_00745 at 796.950 kb on - strand at 796.950 kb on - strand at 797.165 kb on + strand at 797.462 kb on + strand at 797.462 kb on + strand at 797.466 kb on + strand at 797.481 kb on + strand at 797.481 kb on + strand at 797.703 kb on + strand at 797.703 kb on + strand at 797.704 kb on - strand at 797.738 kb on + strand, within ECD_00746 at 797.804 kb on + strand, within ECD_00746 at 797.819 kb on + strand, within ECD_00746 at 797.819 kb on + strand, within ECD_00746 at 797.819 kb on + strand, within ECD_00746 at 797.820 kb on - strand, within ECD_00746 at 797.820 kb on - strand, within ECD_00746
Per-strain Table
Position Strand Gene LocusTag Fraction Bas58 remove 795,354 + ECD_00743 0.85 -0.4 795,526 + -0.6 795,573 - -0.7 795,591 + ECD_00744 0.10 -0.0 795,651 + ECD_00744 0.18 -0.8 795,651 + ECD_00744 0.18 -1.6 795,724 - ECD_00744 0.28 +0.1 795,779 + ECD_00744 0.35 -1.0 795,779 + ECD_00744 0.35 +1.0 796,236 - +0.7 796,414 + ECD_00745 0.22 -0.8 796,439 - ECD_00745 0.26 -1.7 796,477 + ECD_00745 0.32 +1.1 796,696 + ECD_00745 0.64 -0.6 796,718 + ECD_00745 0.67 +0.4 796,719 - ECD_00745 0.67 -1.0 796,721 + ECD_00745 0.68 -0.6 796,751 - ECD_00745 0.72 -0.1 796,825 - ECD_00745 0.83 +0.2 796,825 - ECD_00745 0.83 +0.9 796,826 + ECD_00745 0.83 +0.4 796,950 - +0.0 796,950 - -0.8 797,165 + -0.3 797,462 + -0.2 797,462 + -0.1 797,466 + +0.2 797,481 + -0.5 797,481 + -0.3 797,703 + -0.8 797,703 + -0.8 797,704 - -1.1 797,738 + ECD_00746 0.11 -1.2 797,804 + ECD_00746 0.14 -1.7 797,819 + ECD_00746 0.15 -1.9 797,819 + ECD_00746 0.15 -0.3 797,819 + ECD_00746 0.15 -0.5 797,820 - ECD_00746 0.15 -1.1 797,820 - ECD_00746 0.15 -0.1
Or see this region's nucleotide sequence