Experiment: Bas58
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00429 and ECD_00430 are separated by 237 nucleotides ECD_00430 and ECD_00431 are separated by 217 nucleotides
ECD_00429: ECD_00429 - inner membrane putative NAD(P)-binding transporter, at 470,608 to 472,284
_00429
ECD_00430: ECD_00430 - putative fosmidomycin efflux system protein, at 472,522 to 473,742
_00430
ECD_00431: ECD_00431 - bifunctional UDP-sugar hydrolase/5'-nucleotidase, at 473,960 to 475,612
_00431
Position (kb) 472
473
474 Strain fitness (log2 ratio) -2
-1
0
1
2 at 471.668 kb on - strand, within ECD_00429 at 471.678 kb on + strand, within ECD_00429 at 471.679 kb on - strand, within ECD_00429 at 471.679 kb on - strand, within ECD_00429 at 471.890 kb on - strand, within ECD_00429 at 471.944 kb on - strand, within ECD_00429 at 472.197 kb on + strand at 472.198 kb on - strand at 472.198 kb on - strand at 472.198 kb on - strand at 472.202 kb on - strand at 472.206 kb on + strand at 472.206 kb on + strand at 472.627 kb on - strand at 472.781 kb on - strand, within ECD_00430 at 472.964 kb on - strand, within ECD_00430 at 473.018 kb on + strand, within ECD_00430 at 473.065 kb on + strand, within ECD_00430 at 473.066 kb on - strand, within ECD_00430 at 473.289 kb on + strand, within ECD_00430 at 473.290 kb on - strand, within ECD_00430 at 473.440 kb on + strand, within ECD_00430 at 473.440 kb on + strand, within ECD_00430 at 473.519 kb on - strand, within ECD_00430 at 473.548 kb on + strand, within ECD_00430 at 473.566 kb on - strand, within ECD_00430 at 473.773 kb on - strand at 473.811 kb on + strand at 473.811 kb on + strand at 473.811 kb on + strand at 473.811 kb on + strand at 473.812 kb on - strand at 473.812 kb on - strand at 473.861 kb on + strand at 473.904 kb on - strand at 473.919 kb on - strand at 473.921 kb on + strand at 473.922 kb on - strand at 473.959 kb on + strand at 473.959 kb on + strand at 473.960 kb on - strand at 474.008 kb on - strand at 474.074 kb on - strand at 474.240 kb on + strand, within ECD_00431 at 474.284 kb on + strand, within ECD_00431 at 474.382 kb on + strand, within ECD_00431 at 474.506 kb on + strand, within ECD_00431 at 474.506 kb on + strand, within ECD_00431 at 474.592 kb on + strand, within ECD_00431 at 474.620 kb on + strand, within ECD_00431 at 474.620 kb on + strand, within ECD_00431
Per-strain Table
Position Strand Gene LocusTag Fraction Bas58 remove 471,668 - ECD_00429 0.63 -0.0 471,678 + ECD_00429 0.64 +0.7 471,679 - ECD_00429 0.64 +0.2 471,679 - ECD_00429 0.64 +0.5 471,890 - ECD_00429 0.76 -0.2 471,944 - ECD_00429 0.80 -2.1 472,197 + -1.8 472,198 - +0.5 472,198 - +1.4 472,198 - +0.8 472,202 - +0.2 472,206 + -0.1 472,206 + -0.6 472,627 - +0.7 472,781 - ECD_00430 0.21 +0.0 472,964 - ECD_00430 0.36 -0.8 473,018 + ECD_00430 0.41 +2.0 473,065 + ECD_00430 0.44 +1.8 473,066 - ECD_00430 0.45 +0.0 473,289 + ECD_00430 0.63 -0.1 473,290 - ECD_00430 0.63 +0.6 473,440 + ECD_00430 0.75 +0.2 473,440 + ECD_00430 0.75 +1.2 473,519 - ECD_00430 0.82 -0.8 473,548 + ECD_00430 0.84 +0.7 473,566 - ECD_00430 0.86 +1.0 473,773 - +1.4 473,811 + +0.2 473,811 + +1.0 473,811 + +0.0 473,811 + +0.2 473,812 - -0.3 473,812 - -0.8 473,861 + +0.6 473,904 - +0.5 473,919 - -0.8 473,921 + +2.7 473,922 - -0.8 473,959 + +0.4 473,959 + +1.7 473,960 - +0.1 474,008 - +1.5 474,074 - +0.4 474,240 + ECD_00431 0.17 +1.2 474,284 + ECD_00431 0.20 +1.2 474,382 + ECD_00431 0.26 +0.4 474,506 + ECD_00431 0.33 +0.0 474,506 + ECD_00431 0.33 +0.6 474,592 + ECD_00431 0.38 +0.5 474,620 + ECD_00431 0.40 -0.4 474,620 + ECD_00431 0.40 +0.1
Or see this region's nucleotide sequence