Experiment: Bas58
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00163 and ECD_00164 are separated by 53 nucleotides ECD_00164 and ECD_00165 are separated by 30 nucleotides ECD_00165 and ECD_00166 are separated by 61 nucleotides
ECD_00163: ECD_00163 - phosphodiesterase with model substrate bis-pNPP, at 187,100 to 187,912
_00163
ECD_00164: ECD_00164 - 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase, at 187,966 to 188,790
_00164
ECD_00165: ECD_00165 - uridylyltransferase, at 188,821 to 191,493
_00165
ECD_00166: ECD_00166 - methionine aminopeptidase, at 191,555 to 192,349
_00166
Position (kb) 188
189
190
191
192 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 187.843 kb on + strand at 187.845 kb on + strand at 187.868 kb on + strand at 187.869 kb on - strand at 187.961 kb on + strand at 187.961 kb on + strand at 187.962 kb on - strand at 188.810 kb on - strand at 188.810 kb on - strand at 188.810 kb on - strand at 188.867 kb on - strand at 189.641 kb on + strand, within ECD_00165 at 189.642 kb on - strand, within ECD_00165 at 189.672 kb on + strand, within ECD_00165 at 189.721 kb on + strand, within ECD_00165 at 189.898 kb on + strand, within ECD_00165 at 189.898 kb on + strand, within ECD_00165 at 189.899 kb on - strand, within ECD_00165 at 190.080 kb on + strand, within ECD_00165 at 190.080 kb on + strand, within ECD_00165 at 190.081 kb on - strand, within ECD_00165 at 190.317 kb on - strand, within ECD_00165 at 190.359 kb on + strand, within ECD_00165 at 190.359 kb on + strand, within ECD_00165 at 190.359 kb on + strand, within ECD_00165 at 190.359 kb on + strand, within ECD_00165 at 190.386 kb on + strand, within ECD_00165 at 190.391 kb on - strand, within ECD_00165 at 192.388 kb on + strand at 192.388 kb on + strand at 192.388 kb on + strand at 192.388 kb on + strand at 192.388 kb on + strand at 192.388 kb on + strand at 192.388 kb on + strand at 192.388 kb on + strand at 192.388 kb on + strand at 192.388 kb on + strand at 192.389 kb on - strand at 192.389 kb on - strand at 192.389 kb on - strand at 192.389 kb on - strand at 192.389 kb on - strand at 192.389 kb on - strand at 192.389 kb on - strand at 192.389 kb on - strand at 192.471 kb on + strand at 192.474 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas58 remove 187,843 + -0.8 187,845 + +0.6 187,868 + -2.3 187,869 - +0.1 187,961 + +1.5 187,961 + +0.2 187,962 - -0.3 188,810 - -0.3 188,810 - +0.0 188,810 - -0.6 188,867 - -0.7 189,641 + ECD_00165 0.31 +1.5 189,642 - ECD_00165 0.31 -0.3 189,672 + ECD_00165 0.32 +1.8 189,721 + ECD_00165 0.34 +1.4 189,898 + ECD_00165 0.40 +2.9 189,898 + ECD_00165 0.40 +0.7 189,899 - ECD_00165 0.40 +2.2 190,080 + ECD_00165 0.47 +1.7 190,080 + ECD_00165 0.47 +1.9 190,081 - ECD_00165 0.47 +3.5 190,317 - ECD_00165 0.56 +2.1 190,359 + ECD_00165 0.58 +1.5 190,359 + ECD_00165 0.58 +0.8 190,359 + ECD_00165 0.58 +1.0 190,359 + ECD_00165 0.58 +1.7 190,386 + ECD_00165 0.59 +1.1 190,391 - ECD_00165 0.59 +1.9 192,388 + -0.8 192,388 + -0.3 192,388 + +0.3 192,388 + -2.8 192,388 + -0.9 192,388 + -0.6 192,388 + -0.3 192,388 + -1.3 192,388 + -1.1 192,388 + -0.7 192,389 - -1.5 192,389 - +0.1 192,389 - -1.4 192,389 - -2.0 192,389 - -1.0 192,389 - -1.4 192,389 - -1.8 192,389 - +2.0 192,471 + +0.2 192,474 - +0.3
Or see this region's nucleotide sequence