Experiment: Bas58
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00156 and ECD_00157 are separated by 37 nucleotides ECD_00157 and ECD_00158 overlap by 8 nucleotides ECD_00158 and ECD_00159 are separated by 83 nucleotides
ECD_00156: ECD_00156 - UPF0126 family inner membrane protein, at 179,844 to 180,467
_00156
ECD_00157: ECD_00157 - vitamin B12 ABC transporter periplasmic binding protein, at 180,505 to 181,305
_00157
ECD_00158: ECD_00158 - 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase, at 181,298 to 181,996
_00158
ECD_00159: ECD_00159 - deoxyguanosine triphosphate triphosphohydrolase, at 182,080 to 183,597
_00159
Position (kb) 181
182 Strain fitness (log2 ratio) -2
-1
0
1 at 180.301 kb on - strand, within ECD_00156 at 180.345 kb on + strand, within ECD_00156 at 180.445 kb on - strand at 180.511 kb on + strand at 180.512 kb on - strand at 180.512 kb on - strand at 180.529 kb on - strand at 180.552 kb on + strand at 180.555 kb on + strand at 180.556 kb on - strand at 180.556 kb on - strand at 180.692 kb on - strand, within ECD_00157 at 180.857 kb on + strand, within ECD_00157 at 180.950 kb on - strand, within ECD_00157 at 181.042 kb on - strand, within ECD_00157 at 181.042 kb on - strand, within ECD_00157 at 181.299 kb on + strand at 181.299 kb on + strand at 181.300 kb on - strand at 182.315 kb on - strand, within ECD_00159 at 182.315 kb on - strand, within ECD_00159 at 182.352 kb on + strand, within ECD_00159 at 182.474 kb on + strand, within ECD_00159 at 182.559 kb on - strand, within ECD_00159 at 182.559 kb on - strand, within ECD_00159 at 182.618 kb on + strand, within ECD_00159 at 182.618 kb on + strand, within ECD_00159 at 182.618 kb on + strand, within ECD_00159 at 182.618 kb on + strand, within ECD_00159 at 182.618 kb on + strand, within ECD_00159 at 182.619 kb on - strand, within ECD_00159 at 182.619 kb on - strand, within ECD_00159 at 182.619 kb on - strand, within ECD_00159 at 182.619 kb on - strand, within ECD_00159 at 182.661 kb on + strand, within ECD_00159 at 182.661 kb on + strand, within ECD_00159 at 182.661 kb on + strand, within ECD_00159 at 182.662 kb on - strand, within ECD_00159 at 182.662 kb on - strand, within ECD_00159 at 182.662 kb on - strand, within ECD_00159 at 182.662 kb on - strand, within ECD_00159 at 182.662 kb on - strand, within ECD_00159 at 182.762 kb on - strand, within ECD_00159 at 182.766 kb on - strand, within ECD_00159 at 182.804 kb on - strand, within ECD_00159 at 182.894 kb on - strand, within ECD_00159
Per-strain Table
Position Strand Gene LocusTag Fraction Bas58 remove 180,301 - ECD_00156 0.73 +0.5 180,345 + ECD_00156 0.80 -0.6 180,445 - +0.2 180,511 + -0.3 180,512 - +0.3 180,512 - -2.0 180,529 - +1.4 180,552 + +0.1 180,555 + +0.3 180,556 - +1.7 180,556 - +0.9 180,692 - ECD_00157 0.23 +1.1 180,857 + ECD_00157 0.44 +1.3 180,950 - ECD_00157 0.56 +0.7 181,042 - ECD_00157 0.67 -0.7 181,042 - ECD_00157 0.67 -0.2 181,299 + +0.1 181,299 + -0.1 181,300 - +0.7 182,315 - ECD_00159 0.15 -0.8 182,315 - ECD_00159 0.15 +0.4 182,352 + ECD_00159 0.18 -0.4 182,474 + ECD_00159 0.26 -0.1 182,559 - ECD_00159 0.32 -0.7 182,559 - ECD_00159 0.32 -0.0 182,618 + ECD_00159 0.35 -1.5 182,618 + ECD_00159 0.35 +1.7 182,618 + ECD_00159 0.35 +0.5 182,618 + ECD_00159 0.35 +0.2 182,618 + ECD_00159 0.35 +0.9 182,619 - ECD_00159 0.36 -0.3 182,619 - ECD_00159 0.36 +0.3 182,619 - ECD_00159 0.36 -0.9 182,619 - ECD_00159 0.36 -1.3 182,661 + ECD_00159 0.38 -0.1 182,661 + ECD_00159 0.38 +0.2 182,661 + ECD_00159 0.38 +0.1 182,662 - ECD_00159 0.38 +0.3 182,662 - ECD_00159 0.38 +0.6 182,662 - ECD_00159 0.38 -0.5 182,662 - ECD_00159 0.38 +0.9 182,662 - ECD_00159 0.38 +0.3 182,762 - ECD_00159 0.45 +1.6 182,766 - ECD_00159 0.45 +1.2 182,804 - ECD_00159 0.48 -0.8 182,894 - ECD_00159 0.54 -0.4
Or see this region's nucleotide sequence