Strain Fitness in Pseudomonas sp. RS175 around PFR28_00833

Experiment: octanoate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_00832 and PFR28_00833 overlap by 8 nucleotidesPFR28_00833 and PFR28_00834 are separated by 7 nucleotidesPFR28_00834 and PFR28_00835 overlap by 11 nucleotides PFR28_00832: PFR28_00832 - Flagellar M-ring protein, at 905,236 to 907,020 _00832 PFR28_00833: PFR28_00833 - Flagellar motor switch protein FliG, at 907,013 to 908,032 _00833 PFR28_00834: PFR28_00834 - hypothetical protein, at 908,040 to 908,870 _00834 PFR28_00835: PFR28_00835 - Flagellum-specific ATP synthase, at 908,860 to 910,218 _00835 Position (kb) 907 908 909Strain fitness (log2 ratio) -2 -1 0 1 2 3at 906.036 kb on + strand, within PFR28_00832at 906.036 kb on + strand, within PFR28_00832at 906.036 kb on + strand, within PFR28_00832at 906.036 kb on + strand, within PFR28_00832at 906.036 kb on + strand, within PFR28_00832at 906.037 kb on - strand, within PFR28_00832at 906.037 kb on - strand, within PFR28_00832at 906.070 kb on + strand, within PFR28_00832at 906.070 kb on + strand, within PFR28_00832at 906.070 kb on + strand, within PFR28_00832at 906.070 kb on + strand, within PFR28_00832at 906.071 kb on - strand, within PFR28_00832at 906.071 kb on - strand, within PFR28_00832at 906.289 kb on - strand, within PFR28_00832at 906.314 kb on + strand, within PFR28_00832at 906.314 kb on + strand, within PFR28_00832at 906.314 kb on + strand, within PFR28_00832at 906.315 kb on - strand, within PFR28_00832at 906.315 kb on - strand, within PFR28_00832at 906.564 kb on + strand, within PFR28_00832at 906.680 kb on - strand, within PFR28_00832at 906.716 kb on + strand, within PFR28_00832at 906.716 kb on + strand, within PFR28_00832at 906.717 kb on - strand, within PFR28_00832at 906.717 kb on - strand, within PFR28_00832at 906.717 kb on - strand, within PFR28_00832at 906.824 kb on + strand, within PFR28_00832at 906.824 kb on + strand, within PFR28_00832at 906.824 kb on + strand, within PFR28_00832at 906.824 kb on + strand, within PFR28_00832at 906.824 kb on + strand, within PFR28_00832at 906.824 kb on + strand, within PFR28_00832at 906.825 kb on - strand, within PFR28_00832at 906.825 kb on - strand, within PFR28_00832at 906.825 kb on - strand, within PFR28_00832at 906.825 kb on - strand, within PFR28_00832at 906.825 kb on - strand, within PFR28_00832at 906.825 kb on - strand, within PFR28_00832at 906.925 kb on + strandat 906.925 kb on + strandat 906.925 kb on + strandat 906.926 kb on - strandat 906.926 kb on - strandat 906.926 kb on - strandat 907.259 kb on + strand, within PFR28_00833at 907.259 kb on + strand, within PFR28_00833at 907.259 kb on + strand, within PFR28_00833at 907.259 kb on + strand, within PFR28_00833at 907.259 kb on + strand, within PFR28_00833at 907.259 kb on + strand, within PFR28_00833at 907.259 kb on + strand, within PFR28_00833at 907.260 kb on - strand, within PFR28_00833at 907.260 kb on - strand, within PFR28_00833at 907.260 kb on - strand, within PFR28_00833at 907.260 kb on - strand, within PFR28_00833at 907.260 kb on - strand, within PFR28_00833at 907.563 kb on + strand, within PFR28_00833at 907.564 kb on - strand, within PFR28_00833at 907.564 kb on - strand, within PFR28_00833at 907.564 kb on - strand, within PFR28_00833at 907.812 kb on + strand, within PFR28_00833at 907.812 kb on + strand, within PFR28_00833at 907.813 kb on - strand, within PFR28_00833at 907.813 kb on - strand, within PFR28_00833at 908.030 kb on + strandat 908.030 kb on + strandat 908.030 kb on + strandat 908.030 kb on + strandat 908.030 kb on + strandat 908.030 kb on + strandat 908.030 kb on + strandat 908.030 kb on + strandat 908.030 kb on + strandat 908.030 kb on + strandat 908.030 kb on + strandat 908.030 kb on + strandat 908.030 kb on + strandat 908.030 kb on + strandat 908.031 kb on - strandat 908.031 kb on - strandat 908.031 kb on - strandat 908.039 kb on + strandat 908.039 kb on + strandat 908.039 kb on + strandat 908.039 kb on + strandat 908.039 kb on + strandat 908.039 kb on + strandat 908.039 kb on + strandat 908.039 kb on + strandat 908.040 kb on - strandat 908.040 kb on - strandat 908.040 kb on - strandat 908.040 kb on - strandat 908.040 kb on - strandat 908.040 kb on - strandat 908.040 kb on - strandat 908.040 kb on - strandat 908.040 kb on - strandat 908.040 kb on - strandat 908.040 kb on - strandat 908.040 kb on - strandat 908.250 kb on + strand, within PFR28_00834at 908.250 kb on + strand, within PFR28_00834at 908.250 kb on + strand, within PFR28_00834at 908.251 kb on - strand, within PFR28_00834at 908.251 kb on - strand, within PFR28_00834at 908.251 kb on - strand, within PFR28_00834at 908.400 kb on - strand, within PFR28_00834at 908.400 kb on - strand, within PFR28_00834at 908.548 kb on + strand, within PFR28_00834at 908.548 kb on + strand, within PFR28_00834at 908.548 kb on + strand, within PFR28_00834at 908.549 kb on - strand, within PFR28_00834at 908.549 kb on - strand, within PFR28_00834at 908.549 kb on - strand, within PFR28_00834at 908.549 kb on - strand, within PFR28_00834at 908.550 kb on + strand, within PFR28_00834at 908.550 kb on + strand, within PFR28_00834at 908.550 kb on + strand, within PFR28_00834at 908.550 kb on + strand, within PFR28_00834at 908.550 kb on + strand, within PFR28_00834at 908.550 kb on + strand, within PFR28_00834at 908.550 kb on + strand, within PFR28_00834at 908.550 kb on + strand, within PFR28_00834at 908.550 kb on + strand, within PFR28_00834at 908.550 kb on + strand, within PFR28_00834at 908.550 kb on + strand, within PFR28_00834at 908.550 kb on + strand, within PFR28_00834at 908.550 kb on + strand, within PFR28_00834at 908.550 kb on + strand, within PFR28_00834at 908.550 kb on + strand, within PFR28_00834at 908.551 kb on - strand, within PFR28_00834at 908.551 kb on - strand, within PFR28_00834at 908.551 kb on - strand, within PFR28_00834at 908.551 kb on - strand, within PFR28_00834at 908.551 kb on - strand, within PFR28_00834at 908.551 kb on - strand, within PFR28_00834at 908.551 kb on - strand, within PFR28_00834at 908.551 kb on - strand, within PFR28_00834at 908.551 kb on - strand, within PFR28_00834at 908.551 kb on - strand, within PFR28_00834at 908.551 kb on - strand, within PFR28_00834at 908.551 kb on - strand, within PFR28_00834at 908.551 kb on - strand, within PFR28_00834at 908.551 kb on - strand, within PFR28_00834at 908.551 kb on - strand, within PFR28_00834at 908.551 kb on - strand, within PFR28_00834at 908.551 kb on - strand, within PFR28_00834at 908.551 kb on - strand, within PFR28_00834at 908.771 kb on + strand, within PFR28_00834at 908.772 kb on - strand, within PFR28_00834at 908.902 kb on + strandat 908.902 kb on + strandat 908.902 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction octanoate (C)
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906,036 + PFR28_00832 0.45 +2.1
906,036 + PFR28_00832 0.45 +1.5
906,036 + PFR28_00832 0.45 +2.2
906,036 + PFR28_00832 0.45 +1.5
906,036 + PFR28_00832 0.45 +0.4
906,037 - PFR28_00832 0.45 +0.8
906,037 - PFR28_00832 0.45 +2.3
906,070 + PFR28_00832 0.47 +1.4
906,070 + PFR28_00832 0.47 +2.1
906,070 + PFR28_00832 0.47 +1.0
906,070 + PFR28_00832 0.47 +1.5
906,071 - PFR28_00832 0.47 +2.3
906,071 - PFR28_00832 0.47 +2.4
906,289 - PFR28_00832 0.59 +2.8
906,314 + PFR28_00832 0.60 +1.4
906,314 + PFR28_00832 0.60 +1.8
906,314 + PFR28_00832 0.60 +2.2
906,315 - PFR28_00832 0.60 +0.8
906,315 - PFR28_00832 0.60 +2.0
906,564 + PFR28_00832 0.74 +1.4
906,680 - PFR28_00832 0.81 +0.7
906,716 + PFR28_00832 0.83 +1.8
906,716 + PFR28_00832 0.83 +1.6
906,717 - PFR28_00832 0.83 +1.8
906,717 - PFR28_00832 0.83 +2.0
906,717 - PFR28_00832 0.83 +2.2
906,824 + PFR28_00832 0.89 +2.2
906,824 + PFR28_00832 0.89 +1.4
906,824 + PFR28_00832 0.89 +1.1
906,824 + PFR28_00832 0.89 +1.8
906,824 + PFR28_00832 0.89 +2.0
906,824 + PFR28_00832 0.89 +1.4
906,825 - PFR28_00832 0.89 +1.9
906,825 - PFR28_00832 0.89 +2.0
906,825 - PFR28_00832 0.89 +2.2
906,825 - PFR28_00832 0.89 +1.5
906,825 - PFR28_00832 0.89 +2.2
906,825 - PFR28_00832 0.89 -0.4
906,925 + +2.9
906,925 + +2.2
906,925 + +1.6
906,926 - +1.8
906,926 - +0.0
906,926 - +2.8
907,259 + PFR28_00833 0.24 +3.0
907,259 + PFR28_00833 0.24 +2.3
907,259 + PFR28_00833 0.24 +2.1
907,259 + PFR28_00833 0.24 +0.7
907,259 + PFR28_00833 0.24 +2.5
907,259 + PFR28_00833 0.24 +2.3
907,259 + PFR28_00833 0.24 +2.0
907,260 - PFR28_00833 0.24 -0.1
907,260 - PFR28_00833 0.24 +1.1
907,260 - PFR28_00833 0.24 +2.0
907,260 - PFR28_00833 0.24 +2.8
907,260 - PFR28_00833 0.24 +1.6
907,563 + PFR28_00833 0.54 +0.6
907,564 - PFR28_00833 0.54 +0.5
907,564 - PFR28_00833 0.54 +2.6
907,564 - PFR28_00833 0.54 +1.9
907,812 + PFR28_00833 0.78 +2.0
907,812 + PFR28_00833 0.78 +2.7
907,813 - PFR28_00833 0.78 +2.3
907,813 - PFR28_00833 0.78 +1.8
908,030 + -0.9
908,030 + +1.6
908,030 + -1.2
908,030 + +0.6
908,030 + +0.2
908,030 + -0.2
908,030 + +0.9
908,030 + -0.3
908,030 + -1.1
908,030 + +0.3
908,030 + -1.5
908,030 + -1.2
908,030 + +0.4
908,030 + +0.1
908,031 - +1.2
908,031 - +3.3
908,031 - +2.1
908,039 + +0.6
908,039 + -2.1
908,039 + +0.8
908,039 + -1.1
908,039 + -1.8
908,039 + +1.6
908,039 + +0.0
908,039 + -0.5
908,040 - +1.5
908,040 - +1.3
908,040 - +1.1
908,040 - +1.9
908,040 - +2.1
908,040 - +1.1
908,040 - +0.8
908,040 - +0.9
908,040 - +0.7
908,040 - -0.1
908,040 - +1.5
908,040 - +1.0
908,250 + PFR28_00834 0.25 +3.3
908,250 + PFR28_00834 0.25 +1.7
908,250 + PFR28_00834 0.25 +1.6
908,251 - PFR28_00834 0.25 +2.2
908,251 - PFR28_00834 0.25 +1.9
908,251 - PFR28_00834 0.25 +2.0
908,400 - PFR28_00834 0.43 +1.1
908,400 - PFR28_00834 0.43 +1.0
908,548 + PFR28_00834 0.61 +0.5
908,548 + PFR28_00834 0.61 +1.6
908,548 + PFR28_00834 0.61 +1.7
908,549 - PFR28_00834 0.61 +1.7
908,549 - PFR28_00834 0.61 +1.3
908,549 - PFR28_00834 0.61 +0.6
908,549 - PFR28_00834 0.61 +0.7
908,550 + PFR28_00834 0.61 +1.0
908,550 + PFR28_00834 0.61 +1.4
908,550 + PFR28_00834 0.61 +1.7
908,550 + PFR28_00834 0.61 +2.4
908,550 + PFR28_00834 0.61 +0.6
908,550 + PFR28_00834 0.61 +0.8
908,550 + PFR28_00834 0.61 +0.5
908,550 + PFR28_00834 0.61 +0.6
908,550 + PFR28_00834 0.61 +2.3
908,550 + PFR28_00834 0.61 +1.2
908,550 + PFR28_00834 0.61 +1.4
908,550 + PFR28_00834 0.61 +1.8
908,550 + PFR28_00834 0.61 +1.4
908,550 + PFR28_00834 0.61 +1.9
908,550 + PFR28_00834 0.61 +1.7
908,551 - PFR28_00834 0.61 +1.0
908,551 - PFR28_00834 0.61 +1.7
908,551 - PFR28_00834 0.61 +1.6
908,551 - PFR28_00834 0.61 +1.5
908,551 - PFR28_00834 0.61 +1.5
908,551 - PFR28_00834 0.61 +1.0
908,551 - PFR28_00834 0.61 +0.8
908,551 - PFR28_00834 0.61 +1.6
908,551 - PFR28_00834 0.61 +1.2
908,551 - PFR28_00834 0.61 +2.5
908,551 - PFR28_00834 0.61 +1.9
908,551 - PFR28_00834 0.61 +2.5
908,551 - PFR28_00834 0.61 +1.9
908,551 - PFR28_00834 0.61 +1.5
908,551 - PFR28_00834 0.61 +1.5
908,551 - PFR28_00834 0.61 -0.2
908,551 - PFR28_00834 0.61 +1.6
908,551 - PFR28_00834 0.61 +2.0
908,771 + PFR28_00834 0.88 +0.9
908,772 - PFR28_00834 0.88 +1.4
908,902 + +0.5
908,902 + +1.4
908,902 + +1.3

Or see this region's nucleotide sequence