Strain Fitness in Bosea sp. OAE506 around ABIE41_RS14185

Experiment: R2A with 6-Pentyl-2H-pyran-2-one 0.3133 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS14175 and ABIE41_RS14180 are separated by 346 nucleotidesABIE41_RS14180 and ABIE41_RS14185 are separated by 12 nucleotidesABIE41_RS14185 and ABIE41_RS14190 are separated by 214 nucleotidesABIE41_RS14190 and ABIE41_RS14195 are separated by 236 nucleotides ABIE41_RS14175: ABIE41_RS14175 - MFS transporter, at 2,902,674 to 2,904,299 _RS14175 ABIE41_RS14180: ABIE41_RS14180 - hypothetical protein, at 2,904,646 to 2,905,170 _RS14180 ABIE41_RS14185: ABIE41_RS14185 - 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB, at 2,905,183 to 2,906,028 _RS14185 ABIE41_RS14190: ABIE41_RS14190 - tRNA-Tyr, at 2,906,243 to 2,906,327 _RS14190 ABIE41_RS14195: ABIE41_RS14195 - hypothetical protein, at 2,906,564 to 2,907,070 _RS14195 Position (kb) 2905 2906 2907Strain fitness (log2 ratio) -1 0 1at 2904.230 kb on - strandat 2904.230 kb on - strandat 2904.355 kb on - strandat 2904.355 kb on - strandat 2904.527 kb on + strandat 2904.528 kb on - strandat 2904.528 kb on - strandat 2904.528 kb on - strandat 2904.538 kb on - strandat 2904.599 kb on + strandat 2904.599 kb on + strandat 2904.599 kb on + strandat 2904.599 kb on + strandat 2904.600 kb on - strandat 2904.600 kb on - strandat 2904.600 kb on - strandat 2904.981 kb on + strand, within ABIE41_RS14180at 2904.981 kb on + strand, within ABIE41_RS14180at 2904.981 kb on + strand, within ABIE41_RS14180at 2904.981 kb on + strand, within ABIE41_RS14180at 2904.982 kb on - strand, within ABIE41_RS14180at 2904.982 kb on - strand, within ABIE41_RS14180at 2905.034 kb on - strand, within ABIE41_RS14180at 2905.077 kb on - strand, within ABIE41_RS14180at 2905.077 kb on - strand, within ABIE41_RS14180at 2905.077 kb on - strand, within ABIE41_RS14180at 2905.205 kb on + strandat 2905.205 kb on + strandat 2905.683 kb on - strand, within ABIE41_RS14185at 2905.683 kb on - strand, within ABIE41_RS14185at 2905.683 kb on - strand, within ABIE41_RS14185at 2905.683 kb on - strand, within ABIE41_RS14185at 2906.511 kb on + strandat 2906.664 kb on + strand, within ABIE41_RS14195at 2906.665 kb on - strand, within ABIE41_RS14195at 2906.828 kb on + strand, within ABIE41_RS14195at 2906.828 kb on + strand, within ABIE41_RS14195at 2906.828 kb on + strand, within ABIE41_RS14195at 2906.828 kb on + strand, within ABIE41_RS14195at 2906.828 kb on + strand, within ABIE41_RS14195at 2906.828 kb on + strand, within ABIE41_RS14195at 2906.828 kb on + strand, within ABIE41_RS14195at 2906.828 kb on + strand, within ABIE41_RS14195at 2906.828 kb on + strand, within ABIE41_RS14195at 2906.829 kb on - strand, within ABIE41_RS14195at 2906.829 kb on - strand, within ABIE41_RS14195

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 6-Pentyl-2H-pyran-2-one 0.3133 mM
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2,904,230 - -0.5
2,904,230 - -0.4
2,904,355 - -0.8
2,904,355 - -0.7
2,904,527 + +0.5
2,904,528 - +0.1
2,904,528 - -0.6
2,904,528 - +0.4
2,904,538 - +0.3
2,904,599 + -0.8
2,904,599 + -0.1
2,904,599 + -0.1
2,904,599 + +0.1
2,904,600 - +0.3
2,904,600 - -0.2
2,904,600 - -0.3
2,904,981 + ABIE41_RS14180 0.64 -1.1
2,904,981 + ABIE41_RS14180 0.64 -0.5
2,904,981 + ABIE41_RS14180 0.64 -0.8
2,904,981 + ABIE41_RS14180 0.64 +0.5
2,904,982 - ABIE41_RS14180 0.64 +0.8
2,904,982 - ABIE41_RS14180 0.64 -1.6
2,905,034 - ABIE41_RS14180 0.74 -1.3
2,905,077 - ABIE41_RS14180 0.82 +0.5
2,905,077 - ABIE41_RS14180 0.82 +0.7
2,905,077 - ABIE41_RS14180 0.82 -1.0
2,905,205 + -0.2
2,905,205 + +0.4
2,905,683 - ABIE41_RS14185 0.59 -0.1
2,905,683 - ABIE41_RS14185 0.59 -0.1
2,905,683 - ABIE41_RS14185 0.59 -0.6
2,905,683 - ABIE41_RS14185 0.59 -0.7
2,906,511 + -1.7
2,906,664 + ABIE41_RS14195 0.20 +0.3
2,906,665 - ABIE41_RS14195 0.20 -0.5
2,906,828 + ABIE41_RS14195 0.52 +0.8
2,906,828 + ABIE41_RS14195 0.52 -0.1
2,906,828 + ABIE41_RS14195 0.52 -0.5
2,906,828 + ABIE41_RS14195 0.52 +0.6
2,906,828 + ABIE41_RS14195 0.52 +0.2
2,906,828 + ABIE41_RS14195 0.52 -0.4
2,906,828 + ABIE41_RS14195 0.52 +0.2
2,906,828 + ABIE41_RS14195 0.52 +0.1
2,906,828 + ABIE41_RS14195 0.52 +0.0
2,906,829 - ABIE41_RS14195 0.52 +0.3
2,906,829 - ABIE41_RS14195 0.52 +1.5

Or see this region's nucleotide sequence