Experiment: R2A with 6-Pentyl-2H-pyran-2-one 0.3133 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS01760 and ABIE41_RS01765 are separated by 176 nucleotides ABIE41_RS01765 and ABIE41_RS01770 are separated by 7 nucleotides ABIE41_RS01770 and ABIE41_RS01775 are separated by 426 nucleotides
ABIE41_RS01760: ABIE41_RS01760 - CopG family transcriptional regulator, at 357,428 to 357,655
_RS01760
ABIE41_RS01765: ABIE41_RS01765 - cob(I)yrinic acid a,c-diamide adenosyltransferase, at 357,832 to 358,443
_RS01765
ABIE41_RS01770: ABIE41_RS01770 - bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase, at 358,451 to 358,969
_RS01770
ABIE41_RS01775: ABIE41_RS01775 - HupE/UreJ family protein, at 359,396 to 360,019
_RS01775
Position (kb) 358
359 Strain fitness (log2 ratio) -2
-1
0
1
2 at 357.563 kb on + strand, within ABIE41_RS01760 at 357.564 kb on - strand, within ABIE41_RS01760 at 357.564 kb on - strand, within ABIE41_RS01760 at 357.564 kb on - strand, within ABIE41_RS01760 at 358.413 kb on - strand at 358.413 kb on - strand at 358.413 kb on - strand at 358.458 kb on - strand at 359.090 kb on + strand at 359.169 kb on + strand at 359.169 kb on + strand at 359.169 kb on + strand at 359.169 kb on + strand at 359.169 kb on + strand at 359.272 kb on + strand at 359.272 kb on + strand at 359.351 kb on + strand at 359.351 kb on + strand at 359.351 kb on + strand at 359.351 kb on + strand at 359.351 kb on + strand at 359.351 kb on + strand at 359.585 kb on + strand, within ABIE41_RS01775 at 359.653 kb on + strand, within ABIE41_RS01775 at 359.653 kb on + strand, within ABIE41_RS01775
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 6-Pentyl-2H-pyran-2-one 0.3133 mM remove 357,563 + ABIE41_RS01760 0.59 +0.1 357,564 - ABIE41_RS01760 0.60 +0.9 357,564 - ABIE41_RS01760 0.60 +0.0 357,564 - ABIE41_RS01760 0.60 +0.1 358,413 - -1.4 358,413 - -0.5 358,413 - -1.1 358,458 - +0.4 359,090 + -0.1 359,169 + -1.4 359,169 + -0.6 359,169 + +0.9 359,169 + +1.8 359,169 + +0.3 359,272 + -0.2 359,272 + -0.0 359,351 + +0.8 359,351 + +0.2 359,351 + +1.6 359,351 + +1.1 359,351 + -0.2 359,351 + +0.3 359,585 + ABIE41_RS01775 0.30 -0.2 359,653 + ABIE41_RS01775 0.41 -2.1 359,653 + ABIE41_RS01775 0.41 -0.2
Or see this region's nucleotide sequence