Strain Fitness in Escherichia coli BL21 around ECD_03099

Experiment: Laval1263

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_03097 and ECD_03098 are separated by 364 nucleotidesECD_03098 and ECD_03099 are separated by 55 nucleotidesECD_03099 and ECD_03100 are separated by 91 nucleotides ECD_03097: ECD_03097 - l-arginine-responsive arginine metabolism regulon transcriptional regulator, at 3,245,865 to 3,246,335 _03097 ECD_03098: ECD_03098 - cadmium and peroxide resistance protein, stress-induced, at 3,246,700 to 3,246,963 _03098 ECD_03099: ECD_03099 - putative barnase inhibitor, at 3,247,019 to 3,247,291 _03099 ECD_03100: ECD_03100 - p-hydroxybenzoic acid efflux system component, at 3,247,383 to 3,249,350 _03100 Position (kb) 3247 3248Strain fitness (log2 ratio) -2 -1 0 1at 3246.035 kb on + strand, within ECD_03097at 3246.088 kb on + strand, within ECD_03097at 3246.261 kb on - strand, within ECD_03097at 3246.333 kb on + strandat 3246.464 kb on - strandat 3246.464 kb on - strandat 3246.728 kb on + strand, within ECD_03098at 3246.818 kb on + strand, within ECD_03098at 3246.818 kb on + strand, within ECD_03098at 3246.818 kb on + strand, within ECD_03098at 3246.825 kb on - strand, within ECD_03098at 3246.852 kb on + strand, within ECD_03098at 3247.034 kb on - strandat 3247.083 kb on - strand, within ECD_03099at 3247.083 kb on - strand, within ECD_03099at 3247.167 kb on - strand, within ECD_03099at 3247.196 kb on + strand, within ECD_03099at 3247.196 kb on + strand, within ECD_03099at 3247.197 kb on - strand, within ECD_03099at 3247.279 kb on + strandat 3247.282 kb on - strandat 3247.285 kb on + strandat 3247.341 kb on + strandat 3247.342 kb on - strandat 3247.343 kb on + strandat 3247.385 kb on - strandat 3247.408 kb on + strandat 3247.409 kb on - strandat 3247.412 kb on + strandat 3247.412 kb on + strandat 3247.412 kb on + strandat 3247.413 kb on - strandat 3247.413 kb on - strandat 3247.413 kb on - strandat 3247.413 kb on - strandat 3247.490 kb on - strandat 3247.522 kb on + strandat 3247.535 kb on + strandat 3247.557 kb on + strandat 3247.557 kb on + strandat 3247.557 kb on + strandat 3247.557 kb on + strandat 3247.557 kb on + strandat 3247.557 kb on + strandat 3247.558 kb on - strandat 3247.558 kb on - strandat 3247.558 kb on - strandat 3247.697 kb on + strand, within ECD_03100at 3247.698 kb on - strand, within ECD_03100at 3247.698 kb on - strand, within ECD_03100at 3247.724 kb on - strand, within ECD_03100at 3247.766 kb on + strand, within ECD_03100at 3247.767 kb on - strand, within ECD_03100at 3247.802 kb on + strand, within ECD_03100at 3247.803 kb on - strand, within ECD_03100at 3247.809 kb on + strand, within ECD_03100at 3247.810 kb on - strand, within ECD_03100at 3247.810 kb on - strand, within ECD_03100at 3247.810 kb on - strand, within ECD_03100at 3247.853 kb on + strand, within ECD_03100at 3247.890 kb on + strand, within ECD_03100at 3247.949 kb on + strand, within ECD_03100at 3247.949 kb on + strand, within ECD_03100at 3247.949 kb on + strand, within ECD_03100at 3247.950 kb on - strand, within ECD_03100at 3247.950 kb on - strand, within ECD_03100at 3247.950 kb on - strand, within ECD_03100at 3247.954 kb on - strand, within ECD_03100at 3247.999 kb on - strand, within ECD_03100at 3248.004 kb on + strand, within ECD_03100at 3248.004 kb on + strand, within ECD_03100at 3248.005 kb on - strand, within ECD_03100at 3248.005 kb on - strand, within ECD_03100at 3248.005 kb on - strand, within ECD_03100at 3248.005 kb on - strand, within ECD_03100at 3248.037 kb on - strand, within ECD_03100at 3248.037 kb on - strand, within ECD_03100at 3248.039 kb on + strand, within ECD_03100at 3248.039 kb on + strand, within ECD_03100at 3248.039 kb on + strand, within ECD_03100at 3248.039 kb on + strand, within ECD_03100at 3248.040 kb on - strand, within ECD_03100at 3248.075 kb on + strand, within ECD_03100at 3248.129 kb on + strand, within ECD_03100at 3248.129 kb on + strand, within ECD_03100at 3248.130 kb on - strand, within ECD_03100at 3248.130 kb on - strand, within ECD_03100

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Laval1263
remove
3,246,035 + ECD_03097 0.36 +0.0
3,246,088 + ECD_03097 0.47 +0.3
3,246,261 - ECD_03097 0.84 -0.1
3,246,333 + -0.5
3,246,464 - +0.5
3,246,464 - -0.5
3,246,728 + ECD_03098 0.11 +0.7
3,246,818 + ECD_03098 0.45 +0.9
3,246,818 + ECD_03098 0.45 -0.3
3,246,818 + ECD_03098 0.45 +0.7
3,246,825 - ECD_03098 0.47 +0.7
3,246,852 + ECD_03098 0.58 +0.1
3,247,034 - -0.5
3,247,083 - ECD_03099 0.23 -0.1
3,247,083 - ECD_03099 0.23 -0.3
3,247,167 - ECD_03099 0.54 -0.2
3,247,196 + ECD_03099 0.65 -0.4
3,247,196 + ECD_03099 0.65 -2.4
3,247,197 - ECD_03099 0.65 +0.1
3,247,279 + +0.1
3,247,282 - -0.9
3,247,285 + -0.9
3,247,341 + +0.1
3,247,342 - +0.2
3,247,343 + -0.0
3,247,385 - -0.2
3,247,408 + +1.0
3,247,409 - +0.0
3,247,412 + +1.0
3,247,412 + +0.3
3,247,412 + +0.4
3,247,413 - +0.0
3,247,413 - +0.0
3,247,413 - +0.3
3,247,413 - -0.0
3,247,490 - +0.4
3,247,522 + +0.3
3,247,535 + +1.2
3,247,557 + +0.2
3,247,557 + +0.3
3,247,557 + -0.1
3,247,557 + -0.4
3,247,557 + -0.3
3,247,557 + +0.9
3,247,558 - +0.9
3,247,558 - +1.1
3,247,558 - -0.1
3,247,697 + ECD_03100 0.16 +0.3
3,247,698 - ECD_03100 0.16 -0.6
3,247,698 - ECD_03100 0.16 -0.4
3,247,724 - ECD_03100 0.17 -0.4
3,247,766 + ECD_03100 0.19 +0.5
3,247,767 - ECD_03100 0.20 +0.4
3,247,802 + ECD_03100 0.21 -0.7
3,247,803 - ECD_03100 0.21 -0.1
3,247,809 + ECD_03100 0.22 -0.9
3,247,810 - ECD_03100 0.22 -1.1
3,247,810 - ECD_03100 0.22 -0.4
3,247,810 - ECD_03100 0.22 +0.0
3,247,853 + ECD_03100 0.24 +0.6
3,247,890 + ECD_03100 0.26 +1.0
3,247,949 + ECD_03100 0.29 -0.3
3,247,949 + ECD_03100 0.29 -0.4
3,247,949 + ECD_03100 0.29 -0.1
3,247,950 - ECD_03100 0.29 +0.9
3,247,950 - ECD_03100 0.29 +0.3
3,247,950 - ECD_03100 0.29 -0.5
3,247,954 - ECD_03100 0.29 +0.3
3,247,999 - ECD_03100 0.31 +0.0
3,248,004 + ECD_03100 0.32 -1.0
3,248,004 + ECD_03100 0.32 -0.4
3,248,005 - ECD_03100 0.32 +0.2
3,248,005 - ECD_03100 0.32 -0.4
3,248,005 - ECD_03100 0.32 -0.9
3,248,005 - ECD_03100 0.32 +0.4
3,248,037 - ECD_03100 0.33 +0.2
3,248,037 - ECD_03100 0.33 +1.2
3,248,039 + ECD_03100 0.33 +0.1
3,248,039 + ECD_03100 0.33 +0.5
3,248,039 + ECD_03100 0.33 +0.4
3,248,039 + ECD_03100 0.33 +0.1
3,248,040 - ECD_03100 0.33 +0.7
3,248,075 + ECD_03100 0.35 -0.2
3,248,129 + ECD_03100 0.38 +0.8
3,248,129 + ECD_03100 0.38 +0.8
3,248,130 - ECD_03100 0.38 -0.5
3,248,130 - ECD_03100 0.38 -0.6

Or see this region's nucleotide sequence