Experiment: Laval1263
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03084 and ECD_03085 are separated by 108 nucleotides ECD_03085 and ECD_03086 are separated by 121 nucleotides
ECD_03084: ECD_03084 - sialic acid transporter, at 3,232,247 to 3,233,737
_03084
ECD_03085: ECD_03085 - N-acetylneuraminate lyase, at 3,233,846 to 3,234,739
_03085
ECD_03086: ECD_03086 - sialic acid-inducible nan operon repressor, at 3,234,861 to 3,235,652
_03086
Position (kb)
3233
3234
3235 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3232.931 kb on - strand, within ECD_03084 at 3232.942 kb on + strand, within ECD_03084 at 3232.943 kb on - strand, within ECD_03084 at 3232.943 kb on - strand, within ECD_03084 at 3233.054 kb on + strand, within ECD_03084 at 3233.120 kb on - strand, within ECD_03084 at 3233.248 kb on - strand, within ECD_03084 at 3233.248 kb on - strand, within ECD_03084 at 3233.343 kb on + strand, within ECD_03084 at 3233.415 kb on + strand, within ECD_03084 at 3233.416 kb on - strand, within ECD_03084 at 3233.624 kb on + strand at 3233.728 kb on + strand at 3233.728 kb on + strand at 3233.728 kb on + strand at 3233.729 kb on - strand at 3233.729 kb on - strand at 3233.732 kb on - strand at 3233.805 kb on + strand at 3233.806 kb on - strand at 3233.806 kb on - strand at 3233.957 kb on - strand, within ECD_03085 at 3233.959 kb on - strand, within ECD_03085 at 3234.111 kb on + strand, within ECD_03085 at 3234.111 kb on + strand, within ECD_03085 at 3234.111 kb on + strand, within ECD_03085 at 3234.178 kb on + strand, within ECD_03085 at 3234.180 kb on + strand, within ECD_03085 at 3234.257 kb on + strand, within ECD_03085 at 3234.258 kb on - strand, within ECD_03085 at 3234.271 kb on + strand, within ECD_03085 at 3234.272 kb on - strand, within ECD_03085 at 3234.272 kb on - strand, within ECD_03085 at 3234.272 kb on - strand, within ECD_03085 at 3234.330 kb on + strand, within ECD_03085 at 3234.330 kb on + strand, within ECD_03085 at 3234.365 kb on - strand, within ECD_03085 at 3234.411 kb on + strand, within ECD_03085 at 3234.411 kb on + strand, within ECD_03085 at 3234.411 kb on + strand, within ECD_03085 at 3234.412 kb on - strand, within ECD_03085 at 3234.412 kb on - strand, within ECD_03085 at 3234.581 kb on + strand, within ECD_03085 at 3234.612 kb on + strand, within ECD_03085 at 3234.612 kb on + strand, within ECD_03085 at 3234.613 kb on - strand, within ECD_03085 at 3234.615 kb on - strand, within ECD_03085 at 3234.744 kb on - strand at 3234.744 kb on - strand at 3234.831 kb on + strand at 3234.832 kb on - strand at 3234.833 kb on + strand at 3234.851 kb on + strand at 3234.986 kb on + strand, within ECD_03086 at 3234.998 kb on - strand, within ECD_03086 at 3235.001 kb on + strand, within ECD_03086 at 3235.272 kb on + strand, within ECD_03086 at 3235.272 kb on + strand, within ECD_03086 at 3235.273 kb on - strand, within ECD_03086 at 3235.347 kb on - strand, within ECD_03086 at 3235.393 kb on - strand, within ECD_03086 at 3235.489 kb on - strand, within ECD_03086 at 3235.489 kb on - strand, within ECD_03086
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1263 remove 3,232,931 - ECD_03084 0.46 -0.9 3,232,942 + ECD_03084 0.47 +0.2 3,232,943 - ECD_03084 0.47 -0.3 3,232,943 - ECD_03084 0.47 -3.1 3,233,054 + ECD_03084 0.54 +0.1 3,233,120 - ECD_03084 0.59 -0.7 3,233,248 - ECD_03084 0.67 +0.3 3,233,248 - ECD_03084 0.67 -1.2 3,233,343 + ECD_03084 0.74 -0.3 3,233,415 + ECD_03084 0.78 +1.3 3,233,416 - ECD_03084 0.78 +0.2 3,233,624 + +0.0 3,233,728 + +0.2 3,233,728 + +0.9 3,233,728 + +0.3 3,233,729 - -0.8 3,233,729 - +1.0 3,233,732 - +0.3 3,233,805 + +0.5 3,233,806 - -0.7 3,233,806 - +0.9 3,233,957 - ECD_03085 0.12 +0.0 3,233,959 - ECD_03085 0.13 -0.8 3,234,111 + ECD_03085 0.30 +0.9 3,234,111 + ECD_03085 0.30 +1.0 3,234,111 + ECD_03085 0.30 +0.6 3,234,178 + ECD_03085 0.37 +0.0 3,234,180 + ECD_03085 0.37 +0.5 3,234,257 + ECD_03085 0.46 +0.9 3,234,258 - ECD_03085 0.46 +0.1 3,234,271 + ECD_03085 0.48 +0.9 3,234,272 - ECD_03085 0.48 +0.2 3,234,272 - ECD_03085 0.48 +0.6 3,234,272 - ECD_03085 0.48 +0.3 3,234,330 + ECD_03085 0.54 +1.3 3,234,330 + ECD_03085 0.54 -0.1 3,234,365 - ECD_03085 0.58 +1.3 3,234,411 + ECD_03085 0.63 -0.2 3,234,411 + ECD_03085 0.63 +0.7 3,234,411 + ECD_03085 0.63 -0.1 3,234,412 - ECD_03085 0.63 -0.1 3,234,412 - ECD_03085 0.63 -1.0 3,234,581 + ECD_03085 0.82 +0.8 3,234,612 + ECD_03085 0.86 +0.6 3,234,612 + ECD_03085 0.86 +0.9 3,234,613 - ECD_03085 0.86 -0.2 3,234,615 - ECD_03085 0.86 -0.7 3,234,744 - -0.7 3,234,744 - +0.1 3,234,831 + -0.2 3,234,832 - -0.6 3,234,833 + +1.5 3,234,851 + -0.8 3,234,986 + ECD_03086 0.16 -0.2 3,234,998 - ECD_03086 0.17 +1.3 3,235,001 + ECD_03086 0.18 +0.1 3,235,272 + ECD_03086 0.52 +1.3 3,235,272 + ECD_03086 0.52 -0.4 3,235,273 - ECD_03086 0.52 -0.2 3,235,347 - ECD_03086 0.61 +0.1 3,235,393 - ECD_03086 0.67 -0.7 3,235,489 - ECD_03086 0.79 -0.7 3,235,489 - ECD_03086 0.79 -1.7
Or see this region's nucleotide sequence