Strain Fitness in Escherichia coli BL21 around ECD_03085

Experiment: Laval1263

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03084 and ECD_03085 are separated by 108 nucleotidesECD_03085 and ECD_03086 are separated by 121 nucleotides ECD_03084: ECD_03084 - sialic acid transporter, at 3,232,247 to 3,233,737 _03084 ECD_03085: ECD_03085 - N-acetylneuraminate lyase, at 3,233,846 to 3,234,739 _03085 ECD_03086: ECD_03086 - sialic acid-inducible nan operon repressor, at 3,234,861 to 3,235,652 _03086 Position (kb) 3233 3234 3235Strain fitness (log2 ratio) -3 -2 -1 0 1at 3232.931 kb on - strand, within ECD_03084at 3232.942 kb on + strand, within ECD_03084at 3232.943 kb on - strand, within ECD_03084at 3232.943 kb on - strand, within ECD_03084at 3233.054 kb on + strand, within ECD_03084at 3233.120 kb on - strand, within ECD_03084at 3233.248 kb on - strand, within ECD_03084at 3233.248 kb on - strand, within ECD_03084at 3233.343 kb on + strand, within ECD_03084at 3233.415 kb on + strand, within ECD_03084at 3233.416 kb on - strand, within ECD_03084at 3233.624 kb on + strandat 3233.728 kb on + strandat 3233.728 kb on + strandat 3233.728 kb on + strandat 3233.729 kb on - strandat 3233.729 kb on - strandat 3233.732 kb on - strandat 3233.805 kb on + strandat 3233.806 kb on - strandat 3233.806 kb on - strandat 3233.957 kb on - strand, within ECD_03085at 3233.959 kb on - strand, within ECD_03085at 3234.111 kb on + strand, within ECD_03085at 3234.111 kb on + strand, within ECD_03085at 3234.111 kb on + strand, within ECD_03085at 3234.178 kb on + strand, within ECD_03085at 3234.180 kb on + strand, within ECD_03085at 3234.257 kb on + strand, within ECD_03085at 3234.258 kb on - strand, within ECD_03085at 3234.271 kb on + strand, within ECD_03085at 3234.272 kb on - strand, within ECD_03085at 3234.272 kb on - strand, within ECD_03085at 3234.272 kb on - strand, within ECD_03085at 3234.330 kb on + strand, within ECD_03085at 3234.330 kb on + strand, within ECD_03085at 3234.365 kb on - strand, within ECD_03085at 3234.411 kb on + strand, within ECD_03085at 3234.411 kb on + strand, within ECD_03085at 3234.411 kb on + strand, within ECD_03085at 3234.412 kb on - strand, within ECD_03085at 3234.412 kb on - strand, within ECD_03085at 3234.581 kb on + strand, within ECD_03085at 3234.612 kb on + strand, within ECD_03085at 3234.612 kb on + strand, within ECD_03085at 3234.613 kb on - strand, within ECD_03085at 3234.615 kb on - strand, within ECD_03085at 3234.744 kb on - strandat 3234.744 kb on - strandat 3234.831 kb on + strandat 3234.832 kb on - strandat 3234.833 kb on + strandat 3234.851 kb on + strandat 3234.986 kb on + strand, within ECD_03086at 3234.998 kb on - strand, within ECD_03086at 3235.001 kb on + strand, within ECD_03086at 3235.272 kb on + strand, within ECD_03086at 3235.272 kb on + strand, within ECD_03086at 3235.273 kb on - strand, within ECD_03086at 3235.347 kb on - strand, within ECD_03086at 3235.393 kb on - strand, within ECD_03086at 3235.489 kb on - strand, within ECD_03086at 3235.489 kb on - strand, within ECD_03086

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Per-strain Table

Position Strand Gene LocusTag Fraction Laval1263
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3,232,931 - ECD_03084 0.46 -0.9
3,232,942 + ECD_03084 0.47 +0.2
3,232,943 - ECD_03084 0.47 -0.3
3,232,943 - ECD_03084 0.47 -3.1
3,233,054 + ECD_03084 0.54 +0.1
3,233,120 - ECD_03084 0.59 -0.7
3,233,248 - ECD_03084 0.67 +0.3
3,233,248 - ECD_03084 0.67 -1.2
3,233,343 + ECD_03084 0.74 -0.3
3,233,415 + ECD_03084 0.78 +1.3
3,233,416 - ECD_03084 0.78 +0.2
3,233,624 + +0.0
3,233,728 + +0.2
3,233,728 + +0.9
3,233,728 + +0.3
3,233,729 - -0.8
3,233,729 - +1.0
3,233,732 - +0.3
3,233,805 + +0.5
3,233,806 - -0.7
3,233,806 - +0.9
3,233,957 - ECD_03085 0.12 +0.0
3,233,959 - ECD_03085 0.13 -0.8
3,234,111 + ECD_03085 0.30 +0.9
3,234,111 + ECD_03085 0.30 +1.0
3,234,111 + ECD_03085 0.30 +0.6
3,234,178 + ECD_03085 0.37 +0.0
3,234,180 + ECD_03085 0.37 +0.5
3,234,257 + ECD_03085 0.46 +0.9
3,234,258 - ECD_03085 0.46 +0.1
3,234,271 + ECD_03085 0.48 +0.9
3,234,272 - ECD_03085 0.48 +0.2
3,234,272 - ECD_03085 0.48 +0.6
3,234,272 - ECD_03085 0.48 +0.3
3,234,330 + ECD_03085 0.54 +1.3
3,234,330 + ECD_03085 0.54 -0.1
3,234,365 - ECD_03085 0.58 +1.3
3,234,411 + ECD_03085 0.63 -0.2
3,234,411 + ECD_03085 0.63 +0.7
3,234,411 + ECD_03085 0.63 -0.1
3,234,412 - ECD_03085 0.63 -0.1
3,234,412 - ECD_03085 0.63 -1.0
3,234,581 + ECD_03085 0.82 +0.8
3,234,612 + ECD_03085 0.86 +0.6
3,234,612 + ECD_03085 0.86 +0.9
3,234,613 - ECD_03085 0.86 -0.2
3,234,615 - ECD_03085 0.86 -0.7
3,234,744 - -0.7
3,234,744 - +0.1
3,234,831 + -0.2
3,234,832 - -0.6
3,234,833 + +1.5
3,234,851 + -0.8
3,234,986 + ECD_03086 0.16 -0.2
3,234,998 - ECD_03086 0.17 +1.3
3,235,001 + ECD_03086 0.18 +0.1
3,235,272 + ECD_03086 0.52 +1.3
3,235,272 + ECD_03086 0.52 -0.4
3,235,273 - ECD_03086 0.52 -0.2
3,235,347 - ECD_03086 0.61 +0.1
3,235,393 - ECD_03086 0.67 -0.7
3,235,489 - ECD_03086 0.79 -0.7
3,235,489 - ECD_03086 0.79 -1.7

Or see this region's nucleotide sequence