Strain Fitness in Escherichia coli BL21 around ECD_02990

Experiment: Laval1263

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02989 and ECD_02990 are separated by 96 nucleotidesECD_02990 and ECD_02991 are separated by 29 nucleotidesECD_02991 and ECD_02992 are separated by 15 nucleotides ECD_02989: ECD_02989 - glycerate kinase I, at 3,136,819 to 3,137,964 _02989 ECD_02990: ECD_02990 - tartronate semialdehyde reductase, at 3,138,061 to 3,138,951 _02990 ECD_02991: ECD_02991 - alpha-dehydro-beta-deoxy-D-glucarate aldolase, at 3,138,981 to 3,139,751 _02991 ECD_02992: ECD_02992 - putative (D)-galactarate transporter, at 3,139,767 to 3,141,101 _02992 Position (kb) 3138 3139Strain fitness (log2 ratio) -2 -1 0 1 2at 3137.067 kb on + strand, within ECD_02989at 3137.067 kb on + strand, within ECD_02989at 3137.067 kb on + strand, within ECD_02989at 3137.068 kb on - strand, within ECD_02989at 3137.109 kb on + strand, within ECD_02989at 3137.121 kb on + strand, within ECD_02989at 3137.121 kb on + strand, within ECD_02989at 3137.122 kb on - strand, within ECD_02989at 3137.122 kb on - strand, within ECD_02989at 3137.122 kb on - strand, within ECD_02989at 3137.161 kb on - strand, within ECD_02989at 3137.266 kb on - strand, within ECD_02989at 3137.266 kb on - strand, within ECD_02989at 3137.292 kb on + strand, within ECD_02989at 3137.458 kb on - strand, within ECD_02989at 3137.461 kb on - strand, within ECD_02989at 3137.527 kb on + strand, within ECD_02989at 3137.527 kb on + strand, within ECD_02989at 3137.577 kb on + strand, within ECD_02989at 3137.578 kb on - strand, within ECD_02989at 3137.614 kb on + strand, within ECD_02989at 3137.614 kb on + strand, within ECD_02989at 3137.669 kb on - strand, within ECD_02989at 3137.669 kb on - strand, within ECD_02989at 3137.924 kb on - strandat 3137.935 kb on - strandat 3137.937 kb on - strandat 3137.965 kb on - strandat 3137.968 kb on + strandat 3137.969 kb on - strandat 3137.969 kb on - strandat 3137.969 kb on - strandat 3138.038 kb on + strandat 3138.038 kb on + strandat 3138.070 kb on - strandat 3138.099 kb on - strandat 3138.099 kb on - strandat 3138.115 kb on - strandat 3138.130 kb on + strandat 3138.210 kb on + strand, within ECD_02990at 3138.235 kb on - strand, within ECD_02990at 3138.235 kb on - strand, within ECD_02990at 3138.238 kb on - strand, within ECD_02990at 3138.238 kb on - strand, within ECD_02990at 3138.238 kb on - strand, within ECD_02990at 3138.250 kb on - strand, within ECD_02990at 3138.447 kb on + strand, within ECD_02990at 3138.506 kb on + strand, within ECD_02990at 3138.507 kb on - strand, within ECD_02990at 3138.509 kb on + strand, within ECD_02990at 3138.509 kb on + strand, within ECD_02990at 3138.510 kb on - strand, within ECD_02990at 3138.510 kb on - strand, within ECD_02990at 3138.510 kb on - strand, within ECD_02990at 3138.604 kb on - strand, within ECD_02990at 3138.661 kb on - strand, within ECD_02990at 3138.668 kb on + strand, within ECD_02990at 3138.680 kb on - strand, within ECD_02990at 3138.685 kb on - strand, within ECD_02990at 3138.763 kb on + strand, within ECD_02990at 3138.841 kb on - strand, within ECD_02990at 3138.841 kb on - strand, within ECD_02990at 3138.898 kb on - strandat 3138.931 kb on - strandat 3138.951 kb on + strandat 3138.952 kb on - strandat 3139.167 kb on + strand, within ECD_02991at 3139.200 kb on + strand, within ECD_02991at 3139.274 kb on + strand, within ECD_02991at 3139.279 kb on - strand, within ECD_02991at 3139.297 kb on - strand, within ECD_02991at 3139.310 kb on + strand, within ECD_02991at 3139.310 kb on + strand, within ECD_02991at 3139.311 kb on - strand, within ECD_02991at 3139.311 kb on - strand, within ECD_02991at 3139.361 kb on + strand, within ECD_02991at 3139.362 kb on - strand, within ECD_02991at 3139.453 kb on - strand, within ECD_02991at 3139.473 kb on - strand, within ECD_02991at 3139.475 kb on - strand, within ECD_02991at 3139.499 kb on + strand, within ECD_02991at 3139.533 kb on + strand, within ECD_02991at 3139.533 kb on + strand, within ECD_02991at 3139.534 kb on - strand, within ECD_02991at 3139.756 kb on + strandat 3139.758 kb on + strandat 3139.758 kb on + strandat 3139.759 kb on - strandat 3139.768 kb on + strandat 3139.769 kb on - strandat 3139.785 kb on - strandat 3139.790 kb on + strandat 3139.803 kb on + strandat 3139.803 kb on + strandat 3139.884 kb on + strandat 3139.885 kb on - strandat 3139.891 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Laval1263
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3,137,067 + ECD_02989 0.22 -0.7
3,137,067 + ECD_02989 0.22 +0.3
3,137,067 + ECD_02989 0.22 +0.3
3,137,068 - ECD_02989 0.22 -0.7
3,137,109 + ECD_02989 0.25 +0.7
3,137,121 + ECD_02989 0.26 -1.5
3,137,121 + ECD_02989 0.26 -0.3
3,137,122 - ECD_02989 0.26 -0.7
3,137,122 - ECD_02989 0.26 +0.2
3,137,122 - ECD_02989 0.26 +0.3
3,137,161 - ECD_02989 0.30 +0.2
3,137,266 - ECD_02989 0.39 -0.5
3,137,266 - ECD_02989 0.39 +0.5
3,137,292 + ECD_02989 0.41 +1.9
3,137,458 - ECD_02989 0.56 +0.7
3,137,461 - ECD_02989 0.56 +0.3
3,137,527 + ECD_02989 0.62 +0.7
3,137,527 + ECD_02989 0.62 -0.3
3,137,577 + ECD_02989 0.66 +0.3
3,137,578 - ECD_02989 0.66 -0.1
3,137,614 + ECD_02989 0.69 +0.3
3,137,614 + ECD_02989 0.69 -1.3
3,137,669 - ECD_02989 0.74 -0.7
3,137,669 - ECD_02989 0.74 +0.3
3,137,924 - -0.8
3,137,935 - +0.0
3,137,937 - -0.5
3,137,965 - -2.1
3,137,968 + -0.0
3,137,969 - +0.6
3,137,969 - +1.6
3,137,969 - -0.4
3,138,038 + +1.6
3,138,038 + +0.3
3,138,070 - +0.1
3,138,099 - -1.1
3,138,099 - -0.0
3,138,115 - +0.2
3,138,130 + +0.3
3,138,210 + ECD_02990 0.17 -1.0
3,138,235 - ECD_02990 0.20 -1.0
3,138,235 - ECD_02990 0.20 -1.0
3,138,238 - ECD_02990 0.20 -1.3
3,138,238 - ECD_02990 0.20 -1.5
3,138,238 - ECD_02990 0.20 -0.7
3,138,250 - ECD_02990 0.21 -1.0
3,138,447 + ECD_02990 0.43 +0.3
3,138,506 + ECD_02990 0.50 +0.7
3,138,507 - ECD_02990 0.50 -0.8
3,138,509 + ECD_02990 0.50 -0.1
3,138,509 + ECD_02990 0.50 +0.3
3,138,510 - ECD_02990 0.50 -0.3
3,138,510 - ECD_02990 0.50 -0.8
3,138,510 - ECD_02990 0.50 +0.5
3,138,604 - ECD_02990 0.61 -0.7
3,138,661 - ECD_02990 0.67 -0.3
3,138,668 + ECD_02990 0.68 -2.5
3,138,680 - ECD_02990 0.69 +0.4
3,138,685 - ECD_02990 0.70 +0.1
3,138,763 + ECD_02990 0.79 +0.6
3,138,841 - ECD_02990 0.88 -0.1
3,138,841 - ECD_02990 0.88 +0.6
3,138,898 - +0.3
3,138,931 - +0.3
3,138,951 + +0.3
3,138,952 - +0.4
3,139,167 + ECD_02991 0.24 +0.6
3,139,200 + ECD_02991 0.28 -0.4
3,139,274 + ECD_02991 0.38 +0.5
3,139,279 - ECD_02991 0.39 -0.4
3,139,297 - ECD_02991 0.41 +0.1
3,139,310 + ECD_02991 0.43 -0.3
3,139,310 + ECD_02991 0.43 -0.4
3,139,311 - ECD_02991 0.43 -0.5
3,139,311 - ECD_02991 0.43 -1.4
3,139,361 + ECD_02991 0.49 +0.6
3,139,362 - ECD_02991 0.49 -0.9
3,139,453 - ECD_02991 0.61 -0.7
3,139,473 - ECD_02991 0.64 +0.4
3,139,475 - ECD_02991 0.64 -0.6
3,139,499 + ECD_02991 0.67 +0.7
3,139,533 + ECD_02991 0.72 +0.2
3,139,533 + ECD_02991 0.72 -0.7
3,139,534 - ECD_02991 0.72 +0.7
3,139,756 + -0.0
3,139,758 + -0.2
3,139,758 + +0.7
3,139,759 - +1.2
3,139,768 + +0.0
3,139,769 - -0.2
3,139,785 - -1.1
3,139,790 + +0.2
3,139,803 + -0.7
3,139,803 + +0.2
3,139,884 + -0.4
3,139,885 - -0.7
3,139,891 + +0.2

Or see this region's nucleotide sequence