Experiment: Laval1263
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02936 and ECD_02937 are separated by 194 nucleotides ECD_02937 and ECD_02938 are separated by 78 nucleotides ECD_02938 and ECD_t00056 are separated by 124 nucleotides ECD_t00056 and ECD_02939 are separated by 53 nucleotides
ECD_02936: ECD_02936 - DNA primase, at 3,077,189 to 3,078,934
_02936
ECD_02937: ECD_02937 - RNA polymerase, sigma 70 (sigma D) factor, at 3,079,129 to 3,080,970
_02937
ECD_02938: ECD_02938 - G/U mismatch-specific DNA glycosylase; xanthine DNA glycosylase, at 3,081,049 to 3,081,555
_02938
ECD_t00056: ECD_t00056 - tRNA-Ile, at 3,081,680 to 3,081,755
_t00056
ECD_02939: ECD_02939 - putative siderophore interacting protein, at 3,081,809 to 3,082,573
_02939
Position (kb)
3079
3080
3081 Strain fitness (log2 ratio)
-2
-1
0
1 at 3078.937 kb on + strand at 3078.945 kb on + strand at 3078.945 kb on + strand at 3079.003 kb on + strand at 3079.003 kb on + strand at 3079.003 kb on + strand at 3079.003 kb on + strand at 3079.003 kb on + strand at 3079.005 kb on + strand at 3079.005 kb on + strand at 3079.005 kb on + strand at 3079.005 kb on + strand at 3079.007 kb on + strand at 3079.007 kb on + strand at 3079.007 kb on + strand at 3079.007 kb on + strand at 3079.007 kb on + strand at 3079.007 kb on + strand at 3079.007 kb on + strand at 3079.007 kb on + strand at 3079.007 kb on + strand at 3079.007 kb on + strand at 3079.007 kb on + strand at 3079.007 kb on + strand at 3079.007 kb on + strand at 3079.007 kb on + strand at 3079.007 kb on + strand at 3079.011 kb on + strand at 3079.011 kb on + strand at 3079.011 kb on + strand at 3079.011 kb on + strand at 3079.021 kb on + strand at 3079.021 kb on + strand at 3079.021 kb on + strand at 3079.021 kb on + strand at 3079.025 kb on + strand at 3079.025 kb on + strand at 3080.969 kb on - strand at 3081.302 kb on - strand, within ECD_02938 at 3081.431 kb on + strand, within ECD_02938 at 3081.431 kb on + strand, within ECD_02938 at 3081.432 kb on - strand, within ECD_02938 at 3081.432 kb on - strand, within ECD_02938 at 3081.432 kb on - strand, within ECD_02938 at 3081.432 kb on - strand, within ECD_02938 at 3081.434 kb on - strand, within ECD_02938 at 3081.434 kb on - strand, within ECD_02938 at 3081.556 kb on - strand at 3081.556 kb on - strand at 3081.560 kb on - strand at 3081.570 kb on - strand at 3081.758 kb on + strand at 3081.760 kb on + strand at 3081.760 kb on + strand at 3081.760 kb on + strand at 3081.760 kb on + strand at 3081.899 kb on - strand, within ECD_02939 at 3081.924 kb on + strand, within ECD_02939 at 3081.924 kb on + strand, within ECD_02939 at 3081.925 kb on - strand, within ECD_02939
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1263 remove 3,078,937 + -0.2 3,078,945 + +0.0 3,078,945 + -0.2 3,079,003 + +0.7 3,079,003 + -0.9 3,079,003 + -0.4 3,079,003 + -0.3 3,079,003 + +0.3 3,079,005 + +0.2 3,079,005 + +0.2 3,079,005 + -1.6 3,079,005 + +1.5 3,079,007 + -0.0 3,079,007 + -0.2 3,079,007 + -0.3 3,079,007 + +0.7 3,079,007 + -0.5 3,079,007 + -0.5 3,079,007 + -0.9 3,079,007 + -0.1 3,079,007 + -0.4 3,079,007 + -1.0 3,079,007 + -0.7 3,079,007 + -0.4 3,079,007 + +1.3 3,079,007 + -0.4 3,079,007 + -0.2 3,079,011 + -0.4 3,079,011 + -0.3 3,079,011 + +0.1 3,079,011 + +0.5 3,079,021 + +0.1 3,079,021 + -0.3 3,079,021 + -0.3 3,079,021 + +0.3 3,079,025 + -1.9 3,079,025 + +0.0 3,080,969 - -0.8 3,081,302 - ECD_02938 0.50 -0.1 3,081,431 + ECD_02938 0.75 -0.7 3,081,431 + ECD_02938 0.75 +0.9 3,081,432 - ECD_02938 0.76 +0.2 3,081,432 - ECD_02938 0.76 +0.0 3,081,432 - ECD_02938 0.76 +0.1 3,081,432 - ECD_02938 0.76 -0.5 3,081,434 - ECD_02938 0.76 -0.1 3,081,434 - ECD_02938 0.76 -2.3 3,081,556 - -0.3 3,081,556 - +0.1 3,081,560 - +0.5 3,081,570 - +0.6 3,081,758 + -0.0 3,081,760 + -0.2 3,081,760 + -0.2 3,081,760 + -0.0 3,081,760 + +0.7 3,081,899 - ECD_02939 0.12 -1.3 3,081,924 + ECD_02939 0.15 -1.9 3,081,924 + ECD_02939 0.15 +1.3 3,081,925 - ECD_02939 0.15 -0.7
Or see this region's nucleotide sequence