Experiment: Laval1263
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02648 and ECD_02649 are separated by 118 nucleotides ECD_02649 and ECD_02650 are separated by 4 nucleotides
ECD_02648: ECD_02648 - L-fuculose phosphate aldolase, at 2,767,188 to 2,768,132
_02648
ECD_02649: ECD_02649 - L-ribulokinase AraB-like protein, at 2,768,251 to 2,769,879
_02649
ECD_02650: ECD_02650 - D-ribose-binding periplasmic protein, at 2,769,884 to 2,770,957
_02650
Position (kb)
2768
2769
2770 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2768.042 kb on - strand at 2768.069 kb on + strand at 2768.190 kb on + strand at 2768.191 kb on - strand at 2768.202 kb on - strand at 2768.202 kb on - strand at 2768.229 kb on - strand at 2768.229 kb on - strand at 2768.313 kb on + strand at 2768.513 kb on - strand, within ECD_02649 at 2768.560 kb on - strand, within ECD_02649 at 2768.589 kb on + strand, within ECD_02649 at 2768.589 kb on + strand, within ECD_02649 at 2768.589 kb on + strand, within ECD_02649 at 2768.589 kb on + strand, within ECD_02649 at 2768.589 kb on + strand, within ECD_02649 at 2768.590 kb on - strand, within ECD_02649 at 2768.669 kb on - strand, within ECD_02649 at 2768.743 kb on + strand, within ECD_02649 at 2768.974 kb on + strand, within ECD_02649 at 2769.109 kb on - strand, within ECD_02649 at 2769.227 kb on - strand, within ECD_02649 at 2769.232 kb on - strand, within ECD_02649 at 2769.232 kb on - strand, within ECD_02649 at 2769.256 kb on + strand, within ECD_02649 at 2769.271 kb on - strand, within ECD_02649 at 2769.507 kb on + strand, within ECD_02649 at 2769.508 kb on - strand, within ECD_02649 at 2769.508 kb on - strand, within ECD_02649 at 2769.508 kb on - strand, within ECD_02649 at 2769.508 kb on - strand, within ECD_02649 at 2769.508 kb on - strand, within ECD_02649 at 2769.508 kb on - strand, within ECD_02649 at 2769.508 kb on - strand, within ECD_02649 at 2769.508 kb on - strand, within ECD_02649 at 2769.510 kb on + strand, within ECD_02649 at 2769.511 kb on - strand, within ECD_02649 at 2769.511 kb on - strand, within ECD_02649 at 2769.588 kb on + strand, within ECD_02649 at 2769.832 kb on - strand at 2770.088 kb on - strand, within ECD_02650 at 2770.088 kb on - strand, within ECD_02650 at 2770.088 kb on - strand, within ECD_02650 at 2770.284 kb on - strand, within ECD_02650 at 2770.376 kb on - strand, within ECD_02650 at 2770.396 kb on + strand, within ECD_02650 at 2770.660 kb on - strand, within ECD_02650 at 2770.660 kb on - strand, within ECD_02650 at 2770.761 kb on - strand, within ECD_02650 at 2770.806 kb on - strand, within ECD_02650 at 2770.812 kb on + strand, within ECD_02650 at 2770.813 kb on - strand, within ECD_02650 at 2770.816 kb on + strand, within ECD_02650 at 2770.817 kb on - strand, within ECD_02650
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1263 remove 2,768,042 - +0.0 2,768,069 + +3.2 2,768,190 + -0.4 2,768,191 - -0.2 2,768,202 - -0.5 2,768,202 - +1.3 2,768,229 - +0.6 2,768,229 - -2.3 2,768,313 + +0.1 2,768,513 - ECD_02649 0.16 -0.6 2,768,560 - ECD_02649 0.19 +0.8 2,768,589 + ECD_02649 0.21 +0.6 2,768,589 + ECD_02649 0.21 -0.8 2,768,589 + ECD_02649 0.21 -1.2 2,768,589 + ECD_02649 0.21 +0.0 2,768,589 + ECD_02649 0.21 -0.2 2,768,590 - ECD_02649 0.21 -0.1 2,768,669 - ECD_02649 0.26 +0.2 2,768,743 + ECD_02649 0.30 +0.5 2,768,974 + ECD_02649 0.44 +0.5 2,769,109 - ECD_02649 0.53 +0.7 2,769,227 - ECD_02649 0.60 +0.7 2,769,232 - ECD_02649 0.60 +0.7 2,769,232 - ECD_02649 0.60 +0.5 2,769,256 + ECD_02649 0.62 -0.3 2,769,271 - ECD_02649 0.63 +0.4 2,769,507 + ECD_02649 0.77 -0.8 2,769,508 - ECD_02649 0.77 +0.7 2,769,508 - ECD_02649 0.77 +0.8 2,769,508 - ECD_02649 0.77 +0.2 2,769,508 - ECD_02649 0.77 +0.2 2,769,508 - ECD_02649 0.77 -1.0 2,769,508 - ECD_02649 0.77 +0.8 2,769,508 - ECD_02649 0.77 -0.2 2,769,508 - ECD_02649 0.77 +0.2 2,769,510 + ECD_02649 0.77 -1.3 2,769,511 - ECD_02649 0.77 +0.1 2,769,511 - ECD_02649 0.77 +1.2 2,769,588 + ECD_02649 0.82 +1.0 2,769,832 - -0.1 2,770,088 - ECD_02650 0.19 +0.3 2,770,088 - ECD_02650 0.19 -0.4 2,770,088 - ECD_02650 0.19 -0.6 2,770,284 - ECD_02650 0.37 +1.3 2,770,376 - ECD_02650 0.46 -1.1 2,770,396 + ECD_02650 0.48 -1.1 2,770,660 - ECD_02650 0.72 +0.1 2,770,660 - ECD_02650 0.72 -0.8 2,770,761 - ECD_02650 0.82 -0.4 2,770,806 - ECD_02650 0.86 +1.0 2,770,812 + ECD_02650 0.86 -0.7 2,770,813 - ECD_02650 0.86 +0.4 2,770,816 + ECD_02650 0.87 +1.5 2,770,817 - ECD_02650 0.87 +0.4
Or see this region's nucleotide sequence