Experiment: Laval1263
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02294 and ECD_02295 overlap by 1 nucleotides ECD_02295 and ECD_02296 are separated by 14 nucleotides
ECD_02294: ECD_02294 - aminopeptidase, at 2,382,396 to 2,383,433
_02294
ECD_02295: ECD_02295 - Xaa-Pro aminopeptidase, at 2,383,433 to 2,384,518
_02295
ECD_02296: ECD_02296 - putative enzyme IIC component of PTS, at 2,384,533 to 2,385,780
_02296
Position (kb)
2383
2384
2385 Strain fitness (log2 ratio)
-2
-1
0
1 at 2382.605 kb on + strand, within ECD_02294 at 2382.606 kb on - strand, within ECD_02294 at 2382.606 kb on - strand, within ECD_02294 at 2382.606 kb on - strand, within ECD_02294 at 2383.040 kb on - strand, within ECD_02294 at 2383.174 kb on - strand, within ECD_02294 at 2383.174 kb on - strand, within ECD_02294 at 2383.230 kb on - strand, within ECD_02294 at 2383.230 kb on - strand, within ECD_02294 at 2383.230 kb on - strand, within ECD_02294 at 2383.230 kb on - strand, within ECD_02294 at 2383.417 kb on - strand at 2383.417 kb on - strand at 2383.425 kb on + strand at 2383.655 kb on - strand, within ECD_02295 at 2383.861 kb on - strand, within ECD_02295 at 2384.071 kb on + strand, within ECD_02295 at 2384.323 kb on - strand, within ECD_02295 at 2384.353 kb on - strand, within ECD_02295 at 2384.353 kb on - strand, within ECD_02295 at 2384.353 kb on - strand, within ECD_02295 at 2384.485 kb on + strand at 2384.606 kb on - strand at 2384.636 kb on + strand at 2384.637 kb on - strand at 2384.748 kb on - strand, within ECD_02296 at 2384.748 kb on - strand, within ECD_02296 at 2384.925 kb on + strand, within ECD_02296 at 2384.959 kb on + strand, within ECD_02296 at 2385.057 kb on - strand, within ECD_02296 at 2385.096 kb on + strand, within ECD_02296 at 2385.097 kb on - strand, within ECD_02296 at 2385.141 kb on - strand, within ECD_02296 at 2385.141 kb on - strand, within ECD_02296 at 2385.143 kb on + strand, within ECD_02296 at 2385.144 kb on - strand, within ECD_02296 at 2385.144 kb on - strand, within ECD_02296 at 2385.144 kb on - strand, within ECD_02296 at 2385.144 kb on - strand, within ECD_02296 at 2385.273 kb on + strand, within ECD_02296 at 2385.274 kb on - strand, within ECD_02296 at 2385.327 kb on + strand, within ECD_02296 at 2385.505 kb on + strand, within ECD_02296
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1263 remove 2,382,605 + ECD_02294 0.20 +0.1 2,382,606 - ECD_02294 0.20 +0.4 2,382,606 - ECD_02294 0.20 +1.6 2,382,606 - ECD_02294 0.20 +0.2 2,383,040 - ECD_02294 0.62 +0.8 2,383,174 - ECD_02294 0.75 +1.0 2,383,174 - ECD_02294 0.75 -0.1 2,383,230 - ECD_02294 0.80 -0.2 2,383,230 - ECD_02294 0.80 -0.2 2,383,230 - ECD_02294 0.80 +0.5 2,383,230 - ECD_02294 0.80 +0.8 2,383,417 - -0.4 2,383,417 - +0.3 2,383,425 + +0.8 2,383,655 - ECD_02295 0.20 -0.6 2,383,861 - ECD_02295 0.39 -1.4 2,384,071 + ECD_02295 0.59 -0.2 2,384,323 - ECD_02295 0.82 +0.2 2,384,353 - ECD_02295 0.85 -0.9 2,384,353 - ECD_02295 0.85 +0.1 2,384,353 - ECD_02295 0.85 -0.5 2,384,485 + -0.5 2,384,606 - -0.0 2,384,636 + +1.1 2,384,637 - +1.2 2,384,748 - ECD_02296 0.17 +0.1 2,384,748 - ECD_02296 0.17 -0.1 2,384,925 + ECD_02296 0.31 +0.3 2,384,959 + ECD_02296 0.34 +0.5 2,385,057 - ECD_02296 0.42 +0.5 2,385,096 + ECD_02296 0.45 +0.1 2,385,097 - ECD_02296 0.45 -1.6 2,385,141 - ECD_02296 0.49 -0.5 2,385,141 - ECD_02296 0.49 +0.4 2,385,143 + ECD_02296 0.49 -1.9 2,385,144 - ECD_02296 0.49 +1.1 2,385,144 - ECD_02296 0.49 +0.4 2,385,144 - ECD_02296 0.49 -1.2 2,385,144 - ECD_02296 0.49 +0.1 2,385,273 + ECD_02296 0.59 -0.4 2,385,274 - ECD_02296 0.59 -0.0 2,385,327 + ECD_02296 0.64 +0.4 2,385,505 + ECD_02296 0.78 -0.3
Or see this region's nucleotide sequence