Strain Fitness in Escherichia coli BL21 around ECD_02278

Experiment: Laval1263

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02277 and ECD_02278 overlap by 1 nucleotidesECD_02278 and ECD_02279 are separated by 415 nucleotides ECD_02277: ECD_02277 - putative multidrug efflux system, at 2,358,526 to 2,360,064 _02277 ECD_02278: ECD_02278 - multidrug resistance efflux pump membrane fusion protein, at 2,360,064 to 2,361,227 _02278 ECD_02279: ECD_02279 - response regulator in two-component regulatory system with EvgS, at 2,361,643 to 2,362,257 _02279 Position (kb) 2360 2361 2362Strain fitness (log2 ratio) -1 0 1at 2359.980 kb on + strandat 2360.146 kb on + strandat 2360.630 kb on + strand, within ECD_02278at 2360.822 kb on - strand, within ECD_02278at 2361.601 kb on + strandat 2361.642 kb on + strandat 2361.657 kb on + strandat 2361.859 kb on - strand, within ECD_02279

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Per-strain Table

Position Strand Gene LocusTag Fraction Laval1263
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2,359,980 + +0.3
2,360,146 + +0.4
2,360,630 + ECD_02278 0.49 -0.9
2,360,822 - ECD_02278 0.65 -0.3
2,361,601 + +1.2
2,361,642 + -0.5
2,361,657 + +0.1
2,361,859 - ECD_02279 0.35 -0.3

Or see this region's nucleotide sequence