Strain Fitness in Escherichia coli BL21 around ECD_02113

Experiment: Laval1263

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02112 and ECD_02113 are separated by 27 nucleotidesECD_02113 and ECD_02114 are separated by 148 nucleotides ECD_02112: ECD_02112 - bicyclomycin/cysteine/sulfonamide efflux transporter, at 2,173,419 to 2,174,609 _02112 ECD_02113: ECD_02113 - 16S rRNA pseudouridine(516) synthase, at 2,174,637 to 2,175,332 _02113 ECD_02114: ECD_02114 - putative ATP-dependent DNA or RNA helicase, at 2,175,481 to 2,177,241 _02114 Position (kb) 2174 2175 2176Strain fitness (log2 ratio) -2 -1 0 1at 2173.805 kb on + strand, within ECD_02112at 2173.958 kb on - strand, within ECD_02112at 2173.974 kb on - strand, within ECD_02112at 2173.998 kb on - strand, within ECD_02112at 2174.010 kb on - strand, within ECD_02112at 2174.117 kb on - strand, within ECD_02112at 2174.417 kb on - strand, within ECD_02112at 2174.422 kb on - strand, within ECD_02112at 2174.448 kb on - strand, within ECD_02112at 2174.450 kb on - strand, within ECD_02112at 2174.450 kb on - strand, within ECD_02112at 2174.524 kb on + strandat 2174.524 kb on + strandat 2174.525 kb on - strandat 2174.525 kb on - strandat 2174.525 kb on - strandat 2174.525 kb on - strandat 2174.525 kb on - strandat 2174.525 kb on - strandat 2174.529 kb on - strandat 2174.709 kb on - strand, within ECD_02113at 2174.721 kb on - strand, within ECD_02113at 2174.914 kb on - strand, within ECD_02113at 2174.939 kb on - strand, within ECD_02113at 2174.970 kb on - strand, within ECD_02113at 2175.122 kb on - strand, within ECD_02113at 2175.148 kb on + strand, within ECD_02113at 2175.227 kb on + strand, within ECD_02113at 2175.403 kb on - strandat 2175.415 kb on + strandat 2175.450 kb on + strandat 2175.450 kb on + strandat 2175.470 kb on + strandat 2175.588 kb on + strandat 2175.911 kb on + strand, within ECD_02114at 2175.964 kb on + strand, within ECD_02114at 2176.046 kb on - strand, within ECD_02114at 2176.046 kb on - strand, within ECD_02114at 2176.048 kb on - strand, within ECD_02114at 2176.048 kb on - strand, within ECD_02114

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Per-strain Table

Position Strand Gene LocusTag Fraction Laval1263
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2,173,805 + ECD_02112 0.32 +1.1
2,173,958 - ECD_02112 0.45 -1.7
2,173,974 - ECD_02112 0.47 -0.5
2,173,998 - ECD_02112 0.49 -0.2
2,174,010 - ECD_02112 0.50 -1.2
2,174,117 - ECD_02112 0.59 -1.1
2,174,417 - ECD_02112 0.84 -0.2
2,174,422 - ECD_02112 0.84 -0.0
2,174,448 - ECD_02112 0.86 +0.3
2,174,450 - ECD_02112 0.87 +0.5
2,174,450 - ECD_02112 0.87 +0.5
2,174,524 + +0.0
2,174,524 + +1.0
2,174,525 - +0.4
2,174,525 - +0.9
2,174,525 - +0.5
2,174,525 - +0.8
2,174,525 - +0.0
2,174,525 - +1.0
2,174,529 - -0.1
2,174,709 - ECD_02113 0.10 +1.7
2,174,721 - ECD_02113 0.12 +1.0
2,174,914 - ECD_02113 0.40 -0.4
2,174,939 - ECD_02113 0.43 +1.2
2,174,970 - ECD_02113 0.48 +0.2
2,175,122 - ECD_02113 0.70 +1.2
2,175,148 + ECD_02113 0.73 -0.6
2,175,227 + ECD_02113 0.85 +1.0
2,175,403 - +0.3
2,175,415 + -1.4
2,175,450 + -2.5
2,175,450 + -0.3
2,175,470 + -0.8
2,175,588 + +0.0
2,175,911 + ECD_02114 0.24 +0.5
2,175,964 + ECD_02114 0.27 +0.3
2,176,046 - ECD_02114 0.32 +0.3
2,176,046 - ECD_02114 0.32 -2.2
2,176,048 - ECD_02114 0.32 +0.3
2,176,048 - ECD_02114 0.32 -1.0

Or see this region's nucleotide sequence