Experiment: Laval1263
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02112 and ECD_02113 are separated by 27 nucleotides ECD_02113 and ECD_02114 are separated by 148 nucleotides
ECD_02112: ECD_02112 - bicyclomycin/cysteine/sulfonamide efflux transporter, at 2,173,419 to 2,174,609
_02112
ECD_02113: ECD_02113 - 16S rRNA pseudouridine(516) synthase, at 2,174,637 to 2,175,332
_02113
ECD_02114: ECD_02114 - putative ATP-dependent DNA or RNA helicase, at 2,175,481 to 2,177,241
_02114
Position (kb)
2174
2175
2176 Strain fitness (log2 ratio)
-2
-1
0
1 at 2173.805 kb on + strand, within ECD_02112 at 2173.958 kb on - strand, within ECD_02112 at 2173.974 kb on - strand, within ECD_02112 at 2173.998 kb on - strand, within ECD_02112 at 2174.010 kb on - strand, within ECD_02112 at 2174.117 kb on - strand, within ECD_02112 at 2174.417 kb on - strand, within ECD_02112 at 2174.422 kb on - strand, within ECD_02112 at 2174.448 kb on - strand, within ECD_02112 at 2174.450 kb on - strand, within ECD_02112 at 2174.450 kb on - strand, within ECD_02112 at 2174.524 kb on + strand at 2174.524 kb on + strand at 2174.525 kb on - strand at 2174.525 kb on - strand at 2174.525 kb on - strand at 2174.525 kb on - strand at 2174.525 kb on - strand at 2174.525 kb on - strand at 2174.529 kb on - strand at 2174.709 kb on - strand, within ECD_02113 at 2174.721 kb on - strand, within ECD_02113 at 2174.914 kb on - strand, within ECD_02113 at 2174.939 kb on - strand, within ECD_02113 at 2174.970 kb on - strand, within ECD_02113 at 2175.122 kb on - strand, within ECD_02113 at 2175.148 kb on + strand, within ECD_02113 at 2175.227 kb on + strand, within ECD_02113 at 2175.403 kb on - strand at 2175.415 kb on + strand at 2175.450 kb on + strand at 2175.450 kb on + strand at 2175.470 kb on + strand at 2175.588 kb on + strand at 2175.911 kb on + strand, within ECD_02114 at 2175.964 kb on + strand, within ECD_02114 at 2176.046 kb on - strand, within ECD_02114 at 2176.046 kb on - strand, within ECD_02114 at 2176.048 kb on - strand, within ECD_02114 at 2176.048 kb on - strand, within ECD_02114
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1263 remove 2,173,805 + ECD_02112 0.32 +1.1 2,173,958 - ECD_02112 0.45 -1.7 2,173,974 - ECD_02112 0.47 -0.5 2,173,998 - ECD_02112 0.49 -0.2 2,174,010 - ECD_02112 0.50 -1.2 2,174,117 - ECD_02112 0.59 -1.1 2,174,417 - ECD_02112 0.84 -0.2 2,174,422 - ECD_02112 0.84 -0.0 2,174,448 - ECD_02112 0.86 +0.3 2,174,450 - ECD_02112 0.87 +0.5 2,174,450 - ECD_02112 0.87 +0.5 2,174,524 + +0.0 2,174,524 + +1.0 2,174,525 - +0.4 2,174,525 - +0.9 2,174,525 - +0.5 2,174,525 - +0.8 2,174,525 - +0.0 2,174,525 - +1.0 2,174,529 - -0.1 2,174,709 - ECD_02113 0.10 +1.7 2,174,721 - ECD_02113 0.12 +1.0 2,174,914 - ECD_02113 0.40 -0.4 2,174,939 - ECD_02113 0.43 +1.2 2,174,970 - ECD_02113 0.48 +0.2 2,175,122 - ECD_02113 0.70 +1.2 2,175,148 + ECD_02113 0.73 -0.6 2,175,227 + ECD_02113 0.85 +1.0 2,175,403 - +0.3 2,175,415 + -1.4 2,175,450 + -2.5 2,175,450 + -0.3 2,175,470 + -0.8 2,175,588 + +0.0 2,175,911 + ECD_02114 0.24 +0.5 2,175,964 + ECD_02114 0.27 +0.3 2,176,046 - ECD_02114 0.32 +0.3 2,176,046 - ECD_02114 0.32 -2.2 2,176,048 - ECD_02114 0.32 +0.3 2,176,048 - ECD_02114 0.32 -1.0
Or see this region's nucleotide sequence