Strain Fitness in Escherichia coli BL21 around ECD_02042

Experiment: Laval1263

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02039 and ECD_02040 are separated by 156 nucleotidesECD_02040 and ECD_02041 overlap by 82 nucleotidesECD_02041 and ECD_02042 are separated by 28 nucleotidesECD_02042 and ECD_02043 are separated by 262 nucleotides ECD_02039: ECD_02039 - hypothetical protein, at 2,086,397 to 2,086,588 _02039 ECD_02040: ECD_02040 - IS1 protein InsB, at 2,086,745 to 2,087,248 _02040 ECD_02041: ECD_02041 - IS1 protein InsA, at 2,087,167 to 2,087,442 _02041 ECD_02042: ECD_02042 - DUF2574 family protein, at 2,087,471 to 2,087,659 _02042 ECD_02043: ECD_02043 - antiporter inner membrane protein, at 2,087,922 to 2,089,031 _02043 Position (kb) 2087 2088Strain fitness (log2 ratio) -2 -1 0 1 2at 2086.534 kb on - strand, within ECD_02039at 2086.584 kb on - strandat 2086.613 kb on - strandat 2087.533 kb on + strand, within ECD_02042at 2087.539 kb on + strand, within ECD_02042at 2087.649 kb on + strandat 2087.675 kb on + strandat 2087.716 kb on + strandat 2087.716 kb on + strandat 2087.716 kb on + strandat 2087.724 kb on + strandat 2087.724 kb on + strandat 2088.008 kb on - strandat 2088.075 kb on + strand, within ECD_02043at 2088.075 kb on + strand, within ECD_02043at 2088.075 kb on + strand, within ECD_02043at 2088.076 kb on - strand, within ECD_02043at 2088.113 kb on + strand, within ECD_02043at 2088.113 kb on + strand, within ECD_02043at 2088.114 kb on - strand, within ECD_02043at 2088.179 kb on + strand, within ECD_02043at 2088.188 kb on + strand, within ECD_02043at 2088.188 kb on + strand, within ECD_02043at 2088.188 kb on + strand, within ECD_02043at 2088.512 kb on + strand, within ECD_02043at 2088.513 kb on - strand, within ECD_02043at 2088.524 kb on + strand, within ECD_02043at 2088.592 kb on + strand, within ECD_02043at 2088.593 kb on - strand, within ECD_02043

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Per-strain Table

Position Strand Gene LocusTag Fraction Laval1263
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2,086,534 - ECD_02039 0.71 -1.5
2,086,584 - -0.5
2,086,613 - +0.4
2,087,533 + ECD_02042 0.33 +1.0
2,087,539 + ECD_02042 0.36 +2.2
2,087,649 + +0.7
2,087,675 + -0.1
2,087,716 + -0.7
2,087,716 + -0.7
2,087,716 + +1.2
2,087,724 + +0.4
2,087,724 + +1.4
2,088,008 - -0.2
2,088,075 + ECD_02043 0.14 -0.3
2,088,075 + ECD_02043 0.14 +0.1
2,088,075 + ECD_02043 0.14 +1.1
2,088,076 - ECD_02043 0.14 +0.5
2,088,113 + ECD_02043 0.17 +0.0
2,088,113 + ECD_02043 0.17 +0.4
2,088,114 - ECD_02043 0.17 -1.8
2,088,179 + ECD_02043 0.23 -0.6
2,088,188 + ECD_02043 0.24 -0.8
2,088,188 + ECD_02043 0.24 +0.9
2,088,188 + ECD_02043 0.24 -1.0
2,088,512 + ECD_02043 0.53 -0.8
2,088,513 - ECD_02043 0.53 -0.3
2,088,524 + ECD_02043 0.54 -1.1
2,088,592 + ECD_02043 0.60 -1.4
2,088,593 - ECD_02043 0.60 -1.2

Or see this region's nucleotide sequence