Strain Fitness in Escherichia coli BL21 around ECD_01449

Experiment: Laval1263

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_01448 and ECD_01449 are separated by 376 nucleotidesECD_01449 and ECD_01450 are separated by 130 nucleotides ECD_01448: ECD_01448 - diguanylate cyclase, cold- and stationary phase-induced oxygen-dependent biofilm regulator, at 1,521,226 to 1,522,608 _01448 ECD_01449: ECD_01449 - liprotein, glycosyl hydrolase-like protein, at 1,522,985 to 1,524,304 _01449 ECD_01450: ECD_01450 - glutamate:gamma-aminobutyric acid antiporter, at 1,524,435 to 1,525,970 _01450 Position (kb) 1522 1523 1524 1525Strain fitness (log2 ratio) -1 0 1at 1523.178 kb on + strand, within ECD_01449at 1524.346 kb on - strandat 1524.461 kb on + strandat 1524.464 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Laval1263
remove
1,523,178 + ECD_01449 0.15 +0.4
1,524,346 - -0.6
1,524,461 + +0.3
1,524,464 - +0.1

Or see this region's nucleotide sequence