Strain Fitness in Escherichia coli BL21 around ECD_00832

Experiment: Laval1263

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00831 and ECD_00832 are separated by 17 nucleotidesECD_00832 and ECD_00833 overlap by 4 nucleotides ECD_00831: ECD_00831 - retron EC86 RNA-directed DNA polymerase-like protein, at 878,975 to 879,937 _00831 ECD_00832: ECD_00832 - putative capsid portal protein, at 879,955 to 880,983 _00832 ECD_00833: ECD_00833 - Terminase, ATPase subunit, at 880,980 to 882,746 _00833 Position (kb) 879 880 881Strain fitness (log2 ratio) -1 0 1at 878.957 kb on + strandat 879.125 kb on + strand, within ECD_00831at 879.198 kb on + strand, within ECD_00831at 879.655 kb on + strand, within ECD_00831at 880.346 kb on + strand, within ECD_00832at 880.346 kb on + strand, within ECD_00832at 880.346 kb on + strand, within ECD_00832at 880.347 kb on - strand, within ECD_00832at 880.382 kb on + strand, within ECD_00832at 880.539 kb on - strand, within ECD_00832at 880.558 kb on - strand, within ECD_00832at 880.561 kb on + strand, within ECD_00832at 880.562 kb on - strand, within ECD_00832at 880.721 kb on + strand, within ECD_00832at 880.721 kb on + strand, within ECD_00832at 880.810 kb on + strand, within ECD_00832at 881.241 kb on - strand, within ECD_00833at 881.435 kb on + strand, within ECD_00833at 881.436 kb on - strand, within ECD_00833

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Per-strain Table

Position Strand Gene LocusTag Fraction Laval1263
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878,957 + -0.3
879,125 + ECD_00831 0.16 +0.2
879,198 + ECD_00831 0.23 -1.0
879,655 + ECD_00831 0.71 -0.7
880,346 + ECD_00832 0.38 +0.1
880,346 + ECD_00832 0.38 -0.4
880,346 + ECD_00832 0.38 +0.1
880,347 - ECD_00832 0.38 +0.3
880,382 + ECD_00832 0.41 -0.7
880,539 - ECD_00832 0.57 +0.5
880,558 - ECD_00832 0.59 -0.9
880,561 + ECD_00832 0.59 +1.3
880,562 - ECD_00832 0.59 +1.0
880,721 + ECD_00832 0.74 +0.2
880,721 + ECD_00832 0.74 +0.8
880,810 + ECD_00832 0.83 +1.2
881,241 - ECD_00833 0.15 +0.1
881,435 + ECD_00833 0.26 +0.7
881,436 - ECD_00833 0.26 +0.2

Or see this region's nucleotide sequence