Experiment: plant=Squash; plant sample=QP3; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS25675 and LU632_RS25680 are separated by 32 nucleotides LU632_RS25680 and LU632_RS25685 are separated by 110 nucleotides LU632_RS25685 and LU632_RS25690 overlap by 4 nucleotides LU632_RS25690 and traJ overlap by 4 nucleotides
LU632_RS25675: LU632_RS25675 - shufflon system plasmid conjugative transfer pilus tip adhesin PilV, at 64,208 to 65,599
_RS25675
LU632_RS25680: LU632_RS25680 - hypothetical protein, at 65,632 to 65,835
_RS25680
LU632_RS25685: LU632_RS25685 - DotD/TraH family lipoprotein, at 65,946 to 66,398
_RS25685
LU632_RS25690: LU632_RS25690 - type IV secretion system DotC family protein, at 66,395 to 67,183
_RS25690
LU632_RS25695: traJ - plasmid transfer ATPase TraJ, at 67,180 to 68,337
traJ
Position (kb) 65
66
67 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 64.973 kb on - strand, within LU632_RS25675 at 65.024 kb on + strand, within LU632_RS25675 at 65.024 kb on + strand, within LU632_RS25675 at 65.025 kb on - strand, within LU632_RS25675 at 65.025 kb on - strand, within LU632_RS25675 at 65.027 kb on - strand, within LU632_RS25675 at 65.027 kb on - strand, within LU632_RS25675 at 65.154 kb on + strand, within LU632_RS25675 at 65.155 kb on - strand, within LU632_RS25675 at 65.155 kb on - strand, within LU632_RS25675 at 65.309 kb on + strand, within LU632_RS25675 at 65.310 kb on - strand, within LU632_RS25675 at 65.310 kb on - strand, within LU632_RS25675 at 65.312 kb on - strand, within LU632_RS25675 at 65.331 kb on + strand, within LU632_RS25675 at 65.332 kb on + strand, within LU632_RS25675 at 65.341 kb on - strand, within LU632_RS25675 at 65.341 kb on - strand, within LU632_RS25675 at 65.341 kb on - strand, within LU632_RS25675 at 65.345 kb on - strand, within LU632_RS25675 at 65.381 kb on + strand, within LU632_RS25675 at 65.383 kb on + strand, within LU632_RS25675 at 65.384 kb on - strand, within LU632_RS25675 at 65.462 kb on - strand at 65.462 kb on - strand at 65.472 kb on - strand at 65.485 kb on + strand at 65.486 kb on - strand at 65.486 kb on - strand at 65.515 kb on - strand at 65.533 kb on + strand at 65.561 kb on + strand at 65.562 kb on - strand at 65.562 kb on - strand at 65.562 kb on - strand at 65.575 kb on + strand at 65.623 kb on + strand at 65.627 kb on + strand at 65.627 kb on + strand at 65.627 kb on + strand at 65.673 kb on + strand, within LU632_RS25680 at 65.673 kb on + strand, within LU632_RS25680 at 65.673 kb on + strand, within LU632_RS25680 at 65.673 kb on + strand, within LU632_RS25680 at 65.673 kb on + strand, within LU632_RS25680 at 65.673 kb on + strand, within LU632_RS25680 at 65.674 kb on - strand, within LU632_RS25680 at 65.674 kb on - strand, within LU632_RS25680 at 65.674 kb on - strand, within LU632_RS25680 at 65.674 kb on - strand, within LU632_RS25680 at 65.674 kb on - strand, within LU632_RS25680 at 65.729 kb on + strand, within LU632_RS25680 at 65.729 kb on + strand, within LU632_RS25680 at 65.730 kb on - strand, within LU632_RS25680 at 65.730 kb on - strand, within LU632_RS25680 at 65.733 kb on + strand, within LU632_RS25680 at 65.733 kb on + strand, within LU632_RS25680 at 65.734 kb on - strand, within LU632_RS25680 at 65.754 kb on - strand, within LU632_RS25680 at 65.757 kb on + strand, within LU632_RS25680 at 65.757 kb on + strand, within LU632_RS25680 at 65.856 kb on + strand at 65.896 kb on + strand at 65.896 kb on + strand at 65.896 kb on + strand at 65.896 kb on + strand at 65.896 kb on + strand at 65.896 kb on + strand at 65.896 kb on + strand at 65.896 kb on + strand at 65.896 kb on + strand at 65.896 kb on + strand at 65.897 kb on - strand at 65.897 kb on - strand at 65.928 kb on - strand at 65.959 kb on - strand at 66.014 kb on + strand, within LU632_RS25685 at 66.015 kb on - strand, within LU632_RS25685 at 66.015 kb on - strand, within LU632_RS25685 at 66.015 kb on - strand, within LU632_RS25685 at 66.015 kb on - strand, within LU632_RS25685 at 66.018 kb on - strand, within LU632_RS25685 at 66.082 kb on - strand, within LU632_RS25685 at 66.215 kb on + strand, within LU632_RS25685 at 66.225 kb on + strand, within LU632_RS25685 at 66.226 kb on - strand, within LU632_RS25685 at 66.313 kb on + strand, within LU632_RS25685 at 66.314 kb on - strand, within LU632_RS25685 at 66.314 kb on - strand, within LU632_RS25685 at 66.314 kb on - strand, within LU632_RS25685 at 66.314 kb on - strand, within LU632_RS25685 at 66.361 kb on - strand at 66.409 kb on - strand at 66.409 kb on - strand at 66.409 kb on - strand at 66.409 kb on - strand at 66.426 kb on + strand at 66.427 kb on - strand at 66.472 kb on + strand at 66.472 kb on + strand at 66.473 kb on - strand at 66.473 kb on - strand at 66.506 kb on + strand, within LU632_RS25690 at 66.507 kb on - strand, within LU632_RS25690 at 66.507 kb on - strand, within LU632_RS25690 at 66.645 kb on - strand, within LU632_RS25690 at 66.645 kb on - strand, within LU632_RS25690 at 66.645 kb on - strand, within LU632_RS25690 at 66.677 kb on + strand, within LU632_RS25690 at 66.755 kb on + strand, within LU632_RS25690 at 66.755 kb on + strand, within LU632_RS25690 at 66.755 kb on + strand, within LU632_RS25690 at 66.755 kb on + strand, within LU632_RS25690 at 66.755 kb on + strand, within LU632_RS25690 at 66.755 kb on + strand, within LU632_RS25690 at 66.756 kb on - strand, within LU632_RS25690 at 66.756 kb on - strand, within LU632_RS25690 at 66.756 kb on - strand, within LU632_RS25690 at 66.756 kb on - strand, within LU632_RS25690 at 66.756 kb on - strand, within LU632_RS25690 at 66.756 kb on - strand, within LU632_RS25690 at 66.757 kb on + strand, within LU632_RS25690 at 66.757 kb on + strand, within LU632_RS25690 at 66.757 kb on + strand, within LU632_RS25690 at 66.757 kb on + strand, within LU632_RS25690 at 66.757 kb on + strand, within LU632_RS25690 at 66.757 kb on + strand, within LU632_RS25690 at 66.757 kb on + strand, within LU632_RS25690 at 66.757 kb on + strand, within LU632_RS25690 at 66.758 kb on - strand, within LU632_RS25690 at 66.758 kb on - strand, within LU632_RS25690 at 66.758 kb on - strand, within LU632_RS25690 at 66.758 kb on - strand, within LU632_RS25690 at 66.758 kb on - strand, within LU632_RS25690 at 66.760 kb on + strand, within LU632_RS25690 at 66.760 kb on + strand, within LU632_RS25690 at 66.760 kb on + strand, within LU632_RS25690 at 66.760 kb on + strand, within LU632_RS25690 at 66.760 kb on + strand, within LU632_RS25690 at 66.760 kb on + strand, within LU632_RS25690 at 66.760 kb on + strand, within LU632_RS25690 at 66.761 kb on - strand, within LU632_RS25690 at 66.761 kb on - strand, within LU632_RS25690 at 66.761 kb on - strand, within LU632_RS25690 at 66.761 kb on - strand, within LU632_RS25690 at 66.761 kb on - strand, within LU632_RS25690 at 66.761 kb on - strand, within LU632_RS25690 at 66.761 kb on - strand, within LU632_RS25690 at 66.761 kb on - strand, within LU632_RS25690 at 66.761 kb on - strand, within LU632_RS25690 at 66.761 kb on - strand, within LU632_RS25690 at 66.761 kb on - strand, within LU632_RS25690 at 66.761 kb on - strand, within LU632_RS25690 at 66.761 kb on - strand, within LU632_RS25690 at 66.761 kb on - strand, within LU632_RS25690 at 66.762 kb on + strand, within LU632_RS25690 at 66.762 kb on + strand, within LU632_RS25690 at 66.762 kb on + strand, within LU632_RS25690 at 66.763 kb on - strand, within LU632_RS25690 at 66.763 kb on - strand, within LU632_RS25690 at 66.763 kb on - strand, within LU632_RS25690 at 66.763 kb on - strand, within LU632_RS25690 at 66.787 kb on + strand, within LU632_RS25690 at 67.014 kb on + strand, within LU632_RS25690 at 67.111 kb on + strand at 67.112 kb on - strand at 67.147 kb on + strand at 67.189 kb on - strand at 67.220 kb on + strand at 67.221 kb on - strand at 67.221 kb on - strand at 67.221 kb on - strand at 67.287 kb on - strand at 67.326 kb on + strand, within traJ
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Squash; plant sample=QP3; plant location=NA remove 64,973 - LU632_RS25675 0.55 -0.8 65,024 + LU632_RS25675 0.59 +0.7 65,024 + LU632_RS25675 0.59 +1.7 65,025 - LU632_RS25675 0.59 +0.3 65,025 - LU632_RS25675 0.59 -2.3 65,027 - LU632_RS25675 0.59 +0.9 65,027 - LU632_RS25675 0.59 -1.6 65,154 + LU632_RS25675 0.68 +3.4 65,155 - LU632_RS25675 0.68 -0.8 65,155 - LU632_RS25675 0.68 -0.1 65,309 + LU632_RS25675 0.79 -0.3 65,310 - LU632_RS25675 0.79 +0.2 65,310 - LU632_RS25675 0.79 -2.0 65,312 - LU632_RS25675 0.79 -0.1 65,331 + LU632_RS25675 0.81 +0.2 65,332 + LU632_RS25675 0.81 -0.5 65,341 - LU632_RS25675 0.81 -1.6 65,341 - LU632_RS25675 0.81 +0.7 65,341 - LU632_RS25675 0.81 +1.0 65,345 - LU632_RS25675 0.82 +0.7 65,381 + LU632_RS25675 0.84 +0.7 65,383 + LU632_RS25675 0.84 -0.6 65,384 - LU632_RS25675 0.84 -1.6 65,462 - -0.8 65,462 - -1.8 65,472 - -1.6 65,485 + -1.3 65,486 - -0.1 65,486 - +1.7 65,515 - -0.8 65,533 + +0.7 65,561 + -0.3 65,562 - -1.3 65,562 - +1.4 65,562 - +0.0 65,575 + +1.1 65,623 + -0.3 65,627 + -0.8 65,627 + -1.0 65,627 + -0.6 65,673 + LU632_RS25680 0.20 -0.3 65,673 + LU632_RS25680 0.20 -1.1 65,673 + LU632_RS25680 0.20 -0.5 65,673 + LU632_RS25680 0.20 +0.7 65,673 + LU632_RS25680 0.20 -0.6 65,673 + LU632_RS25680 0.20 -0.1 65,674 - LU632_RS25680 0.21 -0.4 65,674 - LU632_RS25680 0.21 -0.4 65,674 - LU632_RS25680 0.21 +0.0 65,674 - LU632_RS25680 0.21 +0.4 65,674 - LU632_RS25680 0.21 -0.4 65,729 + LU632_RS25680 0.48 +0.3 65,729 + LU632_RS25680 0.48 -0.7 65,730 - LU632_RS25680 0.48 -0.3 65,730 - LU632_RS25680 0.48 -0.8 65,733 + LU632_RS25680 0.50 -1.7 65,733 + LU632_RS25680 0.50 -0.9 65,734 - LU632_RS25680 0.50 +0.4 65,754 - LU632_RS25680 0.60 -0.3 65,757 + LU632_RS25680 0.61 +0.2 65,757 + LU632_RS25680 0.61 +0.0 65,856 + -2.7 65,896 + -0.6 65,896 + -0.1 65,896 + -0.3 65,896 + +0.7 65,896 + +0.0 65,896 + +0.4 65,896 + +0.7 65,896 + -0.4 65,896 + -0.1 65,896 + -0.5 65,897 - -0.7 65,897 - +0.2 65,928 - -1.2 65,959 - +0.2 66,014 + LU632_RS25685 0.15 -1.6 66,015 - LU632_RS25685 0.15 -0.6 66,015 - LU632_RS25685 0.15 +0.0 66,015 - LU632_RS25685 0.15 -0.9 66,015 - LU632_RS25685 0.15 +0.6 66,018 - LU632_RS25685 0.16 -1.0 66,082 - LU632_RS25685 0.30 -0.8 66,215 + LU632_RS25685 0.59 -1.8 66,225 + LU632_RS25685 0.62 +1.2 66,226 - LU632_RS25685 0.62 -0.1 66,313 + LU632_RS25685 0.81 +0.7 66,314 - LU632_RS25685 0.81 +1.2 66,314 - LU632_RS25685 0.81 +0.5 66,314 - LU632_RS25685 0.81 -0.3 66,314 - LU632_RS25685 0.81 +0.7 66,361 - +0.0 66,409 - -0.1 66,409 - +0.5 66,409 - +0.7 66,409 - +1.9 66,426 + +0.9 66,427 - -0.8 66,472 + -0.6 66,472 + -1.6 66,473 - +0.7 66,473 - -3.1 66,506 + LU632_RS25690 0.14 -0.7 66,507 - LU632_RS25690 0.14 -3.6 66,507 - LU632_RS25690 0.14 +0.3 66,645 - LU632_RS25690 0.32 +0.3 66,645 - LU632_RS25690 0.32 -1.6 66,645 - LU632_RS25690 0.32 -1.1 66,677 + LU632_RS25690 0.36 +0.3 66,755 + LU632_RS25690 0.46 +0.3 66,755 + LU632_RS25690 0.46 +0.3 66,755 + LU632_RS25690 0.46 +0.7 66,755 + LU632_RS25690 0.46 -1.8 66,755 + LU632_RS25690 0.46 -0.4 66,755 + LU632_RS25690 0.46 -0.1 66,756 - LU632_RS25690 0.46 +3.2 66,756 - LU632_RS25690 0.46 -1.4 66,756 - LU632_RS25690 0.46 +0.1 66,756 - LU632_RS25690 0.46 +0.3 66,756 - LU632_RS25690 0.46 -1.1 66,756 - LU632_RS25690 0.46 -0.1 66,757 + LU632_RS25690 0.46 +0.2 66,757 + LU632_RS25690 0.46 +0.7 66,757 + LU632_RS25690 0.46 +1.5 66,757 + LU632_RS25690 0.46 +0.7 66,757 + LU632_RS25690 0.46 +1.1 66,757 + LU632_RS25690 0.46 -0.1 66,757 + LU632_RS25690 0.46 -0.1 66,757 + LU632_RS25690 0.46 +0.1 66,758 - LU632_RS25690 0.46 -1.1 66,758 - LU632_RS25690 0.46 -0.3 66,758 - LU632_RS25690 0.46 -1.3 66,758 - LU632_RS25690 0.46 +0.4 66,758 - LU632_RS25690 0.46 -2.1 66,760 + LU632_RS25690 0.46 -2.8 66,760 + LU632_RS25690 0.46 -0.8 66,760 + LU632_RS25690 0.46 -1.5 66,760 + LU632_RS25690 0.46 +0.7 66,760 + LU632_RS25690 0.46 -1.1 66,760 + LU632_RS25690 0.46 +0.2 66,760 + LU632_RS25690 0.46 +0.2 66,761 - LU632_RS25690 0.46 -2.6 66,761 - LU632_RS25690 0.46 +1.1 66,761 - LU632_RS25690 0.46 +1.4 66,761 - LU632_RS25690 0.46 +0.5 66,761 - LU632_RS25690 0.46 +0.4 66,761 - LU632_RS25690 0.46 -1.7 66,761 - LU632_RS25690 0.46 -3.1 66,761 - LU632_RS25690 0.46 -0.0 66,761 - LU632_RS25690 0.46 -0.5 66,761 - LU632_RS25690 0.46 -2.3 66,761 - LU632_RS25690 0.46 -0.7 66,761 - LU632_RS25690 0.46 -2.1 66,761 - LU632_RS25690 0.46 -0.9 66,761 - LU632_RS25690 0.46 +0.3 66,762 + LU632_RS25690 0.47 -1.8 66,762 + LU632_RS25690 0.47 -0.9 66,762 + LU632_RS25690 0.47 -0.3 66,763 - LU632_RS25690 0.47 -0.2 66,763 - LU632_RS25690 0.47 +0.4 66,763 - LU632_RS25690 0.47 +1.0 66,763 - LU632_RS25690 0.47 +0.2 66,787 + LU632_RS25690 0.50 +3.1 67,014 + LU632_RS25690 0.78 -0.3 67,111 + +0.5 67,112 - -1.7 67,147 + -0.4 67,189 - -1.3 67,220 + +0.2 67,221 - -1.1 67,221 - +1.0 67,221 - +1.7 67,287 - +0.2 67,326 + traJ LU632_RS25695 0.13 -0.6
Or see this region's nucleotide sequence