Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS25645

Experiment: plant=Squash; plant sample=QP3; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP3; plant location=NA
58,247	+	pilO2	LU632_RS25640	0.30	+0.2
58,247	+	pilO2	LU632_RS25640	0.30	-0.8
58,348	+	pilO2	LU632_RS25640	0.38	-1.3
58,348	+	pilO2	LU632_RS25640	0.38	+1.7
58,348	+	pilO2	LU632_RS25640	0.38	-1.8
58,349	-	pilO2	LU632_RS25640	0.38	-1.1
58,349	-	pilO2	LU632_RS25640	0.38	-0.8
58,349	-	pilO2	LU632_RS25640	0.38	+0.5
58,349	-	pilO2	LU632_RS25640	0.38	+0.6
58,349	-	pilO2	LU632_RS25640	0.38	+0.3
58,349	-	pilO2	LU632_RS25640	0.38	+0.8
58,349	-	pilO2	LU632_RS25640	0.38	-1.9
58,349	-	pilO2	LU632_RS25640	0.38	+0.3
58,349	-	pilO2	LU632_RS25640	0.38	+0.2
58,415	+	pilO2	LU632_RS25640	0.43	-1.6
58,415	+	pilO2	LU632_RS25640	0.43	-0.4
58,415	+	pilO2	LU632_RS25640	0.43	+1.6
58,416	-	pilO2	LU632_RS25640	0.43	+0.8
58,416	-	pilO2	LU632_RS25640	0.43	+0.1
58,416	-	pilO2	LU632_RS25640	0.43	-0.3
58,416	-	pilO2	LU632_RS25640	0.43	-0.0
58,443	-	pilO2	LU632_RS25640	0.45	+0.9
58,473	+	pilO2	LU632_RS25640	0.48	-1.0
58,474	-	pilO2	LU632_RS25640	0.48	-1.3
58,501	+	pilO2	LU632_RS25640	0.50	-0.0
58,502	-	pilO2	LU632_RS25640	0.50	-2.3
58,502	-	pilO2	LU632_RS25640	0.50	+3.0
58,554	-	pilO2	LU632_RS25640	0.54	-0.5
58,829	-	pilO2	LU632_RS25640	0.75	-0.6
58,829	-	pilO2	LU632_RS25640	0.75	+0.1
58,900	-	pilO2	LU632_RS25640	0.81	+2.2
58,948	+	pilO2	LU632_RS25640	0.84	-1.5
58,948	+	pilO2	LU632_RS25640	0.84	-0.3
58,949	-	pilO2	LU632_RS25640	0.84	-0.5
59,003	+	pilO2	LU632_RS25640	0.89	+0.6
59,003	+	pilO2	LU632_RS25640	0.89	-0.3
59,068	+				-2.7
59,069	-				+0.1
59,116	-				+1.3
59,116	-				-0.6
59,136	+				-0.2
59,301	+	pilP	LU632_RS25645	0.29	-0.8
59,302	-	pilP	LU632_RS25645	0.29	-2.4
59,334	+	pilP	LU632_RS25645	0.35	-1.1
59,704	+				-0.3
59,704	+				-0.3
59,713	+				-1.6
59,714	-				-0.6
59,719	+				+0.1
59,719	+				+0.1
59,811	+				+0.0
59,811	+				-3.2
59,811	+				+2.0
59,811	+				+1.6
59,811	+				+0.7
59,811	+				-0.3
59,812	-				+0.7
59,812	-				+0.2
59,870	-	tadA	LU632_RS25650	0.11	+0.9
59,929	+	tadA	LU632_RS25650	0.15	+0.2
59,929	+	tadA	LU632_RS25650	0.15	-0.2
59,929	+	tadA	LU632_RS25650	0.15	-0.5
60,005	-	tadA	LU632_RS25650	0.20	-1.4
60,018	+	tadA	LU632_RS25650	0.21	+0.3
60,018	+	tadA	LU632_RS25650	0.21	+0.2
60,019	-	tadA	LU632_RS25650	0.21	+0.4
60,186	-	tadA	LU632_RS25650	0.32	+0.4
60,238	+	tadA	LU632_RS25650	0.35	+1.7
60,239	-	tadA	LU632_RS25650	0.35	+0.9
60,260	+	tadA	LU632_RS25650	0.37	+0.4
60,260	+	tadA	LU632_RS25650	0.37	+0.5
60,260	+	tadA	LU632_RS25650	0.37	+1.5
60,260	+	tadA	LU632_RS25650	0.37	-0.9
60,260	+	tadA	LU632_RS25650	0.37	+0.7
60,261	-	tadA	LU632_RS25650	0.37	+0.6
60,264	+	tadA	LU632_RS25650	0.37	-0.3
60,265	-	tadA	LU632_RS25650	0.37	+0.2
60,313	+	tadA	LU632_RS25650	0.40	+0.7
60,313	+	tadA	LU632_RS25650	0.40	-1.7
60,433	+	tadA	LU632_RS25650	0.48	+1.5
60,433	+	tadA	LU632_RS25650	0.48	+1.1
60,434	-	tadA	LU632_RS25650	0.48	+0.4
60,444	-	tadA	LU632_RS25650	0.49	+0.3
60,444	-	tadA	LU632_RS25650	0.49	-0.2
60,444	-	tadA	LU632_RS25650	0.49	-0.5
60,520	-	tadA	LU632_RS25650	0.54	-2.1
60,562	-	tadA	LU632_RS25650	0.57	+1.1
60,603	+	tadA	LU632_RS25650	0.60	+0.1